Gene : Pp3c21_4920 P. patens v3.3
Defline:  (1 of 1) PF07544 - RNA polymerase II transcription mediator complex subunit 9 (Med9) Genomic Order:  218
Name:  ? Pp3c21_4920 Secondary Identifier:  ? PAC:32914389
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c21_4920 0.5kb upstream 0.5kb upstream 3516 true Chr21: 3132883-3136398 Physcomitrium patens
Pp3c21_4920 0.5kb upstream 0.5kb upstream 500 false Chr21: 3135899-3136398 Physcomitrium patens
Pp3c21_4920 0.5kb downstream 0.5kb downstream 3516 true Chr21: 3132383-3135898 Physcomitrium patens
Pp3c21_4920 0.5kb downstream 0.5kb downstream 500 false Chr21: 3132383-3132882 Physcomitrium patens
Pp3c21_4920 1.0kb upstream 1.0kb upstream 4016 true Chr21: 3132883-3136898 Physcomitrium patens
Pp3c21_4920 1.0kb upstream 1.0kb upstream 1000 false Chr21: 3135899-3136898 Physcomitrium patens
Pp3c21_4920 1.0kb downstream 1.0kb downstream 4016 true Chr21: 3131883-3135898 Physcomitrium patens
Pp3c21_4920 1.0kb downstream 1.0kb downstream 1000 false Chr21: 3131883-3132882 Physcomitrium patens
Pp3c21_4920 2.0kb upstream 2.0kb upstream 5016 true Chr21: 3132883-3137898 Physcomitrium patens
Pp3c21_4920 2.0kb upstream 2.0kb upstream 2000 false Chr21: 3135899-3137898 Physcomitrium patens
Pp3c21_4920 2.0kb downstream 2.0kb downstream 5016 true Chr21: 3130883-3135898 Physcomitrium patens
Pp3c21_4920 2.0kb downstream 2.0kb downstream 2000 false Chr21: 3130883-3132882 Physcomitrium patens
Pp3c21_4920 5.0kb upstream 5.0kb upstream 8016 true Chr21: 3132883-3140898 Physcomitrium patens
Pp3c21_4920 5.0kb upstream 5.0kb upstream 5000 false Chr21: 3135899-3140898 Physcomitrium patens
Pp3c21_4920 5.0kb downstream 5.0kb downstream 8016 true Chr21: 3127883-3135898 Physcomitrium patens
Pp3c21_4920 5.0kb downstream 5.0kb downstream 5000 false Chr21: 3127883-3132882 Physcomitrium patens
Pp3c21_4920 10.0kb upstream 10.0kb upstream 13016 true Chr21: 3132883-3145898 Physcomitrium patens
Pp3c21_4920 10.0kb upstream 10.0kb upstream 10000 false Chr21: 3135899-3145898 Physcomitrium patens
Pp3c21_4920 10.0kb downstream 10.0kb downstream 13016 true Chr21: 3122883-3135898 Physcomitrium patens
Pp3c21_4920 10.0kb downstream 10.0kb downstream 10000 false Chr21: 3122883-3132882 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121349503 5274 Embryophyte View MSA
123381335 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.943        
cufflinks 0.646        
cufflinks 0.601        
cufflinks 1.33       High
cufflinks 0.859        
cufflinks 0.654        
cufflinks 0.772        
cufflinks 0.391       Low
cufflinks 0.856        
cufflinks 0.748        
cufflinks 0.764        
cufflinks 0.512        
cufflinks 0.798        
cufflinks 0.861        
cufflinks 0.27       Low
cufflinks 0.726        
cufflinks 0.637        
cufflinks 0.81        
cufflinks 0.297       Low
cufflinks 0.938        
cufflinks 1.162       High
cufflinks 0.325       Low
cufflinks 0.859        
cufflinks 0.188       Low
cufflinks 0.679        
cufflinks 1.134       High
cufflinks 0.627        
cufflinks 0.54        
cufflinks 0.729        
cufflinks 0.718        

0 Strain