Gene : Pp3c21_3700 P. patens v3.3
Defline:  (1 of 26) PF00651//PF03000 - BTB/POZ domain (BTB) // NPH3 family (NPH3) Genomic Order:  167
Name:  ? Pp3c21_3700 Secondary Identifier:  ? PAC:32915303
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c21_3700 0.5kb upstream 0.5kb upstream 4494 true Chr21: 2236111-2240604 Physcomitrium patens
Pp3c21_3700 0.5kb upstream 0.5kb upstream 500 false Chr21: 2240105-2240604 Physcomitrium patens
Pp3c21_3700 0.5kb downstream 0.5kb downstream 4494 true Chr21: 2235611-2240104 Physcomitrium patens
Pp3c21_3700 0.5kb downstream 0.5kb downstream 500 false Chr21: 2235611-2236110 Physcomitrium patens
Pp3c21_3700 1.0kb upstream 1.0kb upstream 4994 true Chr21: 2236111-2241104 Physcomitrium patens
Pp3c21_3700 1.0kb upstream 1.0kb upstream 1000 false Chr21: 2240105-2241104 Physcomitrium patens
Pp3c21_3700 1.0kb downstream 1.0kb downstream 4994 true Chr21: 2235111-2240104 Physcomitrium patens
Pp3c21_3700 1.0kb downstream 1.0kb downstream 1000 false Chr21: 2235111-2236110 Physcomitrium patens
Pp3c21_3700 2.0kb upstream 2.0kb upstream 5994 true Chr21: 2236111-2242104 Physcomitrium patens
Pp3c21_3700 2.0kb upstream 2.0kb upstream 2000 false Chr21: 2240105-2242104 Physcomitrium patens
Pp3c21_3700 2.0kb downstream 2.0kb downstream 5994 true Chr21: 2234111-2240104 Physcomitrium patens
Pp3c21_3700 2.0kb downstream 2.0kb downstream 2000 false Chr21: 2234111-2236110 Physcomitrium patens
Pp3c21_3700 5.0kb upstream 5.0kb upstream 8994 true Chr21: 2236111-2245104 Physcomitrium patens
Pp3c21_3700 5.0kb upstream 5.0kb upstream 5000 false Chr21: 2240105-2245104 Physcomitrium patens
Pp3c21_3700 5.0kb downstream 5.0kb downstream 8994 true Chr21: 2231111-2240104 Physcomitrium patens
Pp3c21_3700 5.0kb downstream 5.0kb downstream 5000 false Chr21: 2231111-2236110 Physcomitrium patens
Pp3c21_3700 10.0kb upstream 10.0kb upstream 13994 true Chr21: 2236111-2250104 Physcomitrium patens
Pp3c21_3700 10.0kb upstream 10.0kb upstream 10000 false Chr21: 2240105-2250104 Physcomitrium patens
Pp3c21_3700 10.0kb downstream 10.0kb downstream 13994 true Chr21: 2226111-2240104 Physcomitrium patens
Pp3c21_3700 10.0kb downstream 10.0kb downstream 10000 false Chr21: 2226111-2236110 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348430 5274 Embryophyte View MSA
123380863 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.023     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.053     Low  
cufflinks 0.022     Low  
cufflinks 0.236       High
cufflinks 0.008     Low  
cufflinks 0.266       High
cufflinks 0.004     Low Low
cufflinks 0.042     Low  
cufflinks 0.006     Low Low
cufflinks 0.013     Low  
cufflinks 0.002     Low Low
cufflinks 0.183        
cufflinks 0.004     Low Low
cufflinks 0.013     Low  
cufflinks 0.127        
cufflinks 0.105        
cufflinks 0.18        
cufflinks 0.449       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.36       High
cufflinks 0.008     Low  
cufflinks 0.381       High
cufflinks 0.003     Low Low
cufflinks 0.373       High
cufflinks 0.032     Low  
cufflinks 0.2        
cufflinks 0.052     Low  

0 Strain