Gene : Pp3c21_2450 P. patens v3.3
Defline:  (1 of 4) PF01713//PF08590 - Smr domain (Smr) // Domain of unknown function (DUF1771) (DUF1771) Genomic Order:  115
Name:  ? Pp3c21_2450 Secondary Identifier:  ? PAC:32914571
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c21_2450 0.5kb upstream 0.5kb upstream 3342 true Chr21: 1544064-1547405 Physcomitrium patens
Pp3c21_2450 0.5kb upstream 0.5kb upstream 500 false Chr21: 1546906-1547405 Physcomitrium patens
Pp3c21_2450 0.5kb downstream 0.5kb downstream 3342 true Chr21: 1543564-1546905 Physcomitrium patens
Pp3c21_2450 0.5kb downstream 0.5kb downstream 500 false Chr21: 1543564-1544063 Physcomitrium patens
Pp3c21_2450 1.0kb upstream 1.0kb upstream 3842 true Chr21: 1544064-1547905 Physcomitrium patens
Pp3c21_2450 1.0kb upstream 1.0kb upstream 1000 false Chr21: 1546906-1547905 Physcomitrium patens
Pp3c21_2450 1.0kb downstream 1.0kb downstream 3842 true Chr21: 1543064-1546905 Physcomitrium patens
Pp3c21_2450 1.0kb downstream 1.0kb downstream 1000 false Chr21: 1543064-1544063 Physcomitrium patens
Pp3c21_2450 2.0kb upstream 2.0kb upstream 4842 true Chr21: 1544064-1548905 Physcomitrium patens
Pp3c21_2450 2.0kb upstream 2.0kb upstream 2000 false Chr21: 1546906-1548905 Physcomitrium patens
Pp3c21_2450 2.0kb downstream 2.0kb downstream 4842 true Chr21: 1542064-1546905 Physcomitrium patens
Pp3c21_2450 2.0kb downstream 2.0kb downstream 2000 false Chr21: 1542064-1544063 Physcomitrium patens
Pp3c21_2450 5.0kb upstream 5.0kb upstream 7842 true Chr21: 1544064-1551905 Physcomitrium patens
Pp3c21_2450 5.0kb upstream 5.0kb upstream 5000 false Chr21: 1546906-1551905 Physcomitrium patens
Pp3c21_2450 5.0kb downstream 5.0kb downstream 7842 true Chr21: 1539064-1546905 Physcomitrium patens
Pp3c21_2450 5.0kb downstream 5.0kb downstream 5000 false Chr21: 1539064-1544063 Physcomitrium patens
Pp3c21_2450 10.0kb upstream 10.0kb upstream 12842 true Chr21: 1544064-1556905 Physcomitrium patens
Pp3c21_2450 10.0kb upstream 10.0kb upstream 10000 false Chr21: 1546906-1556905 Physcomitrium patens
Pp3c21_2450 10.0kb downstream 10.0kb downstream 12842 true Chr21: 1534064-1546905 Physcomitrium patens
Pp3c21_2450 10.0kb downstream 10.0kb downstream 10000 false Chr21: 1534064-1544063 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344234 5274 Embryophyte View MSA
123380011 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.579       Low
cufflinks 1.889       High
cufflinks 0.552       Low
cufflinks 1.689        
cufflinks 1.397        
cufflinks 0.975        
cufflinks 1.084        
cufflinks 1.145        
cufflinks 1.713        
cufflinks 1.479        
cufflinks 1.526        
cufflinks 1.582        
cufflinks 0.824        
cufflinks 0.758       Low
cufflinks 1.086        
cufflinks 0.499       Low
cufflinks 1.514        
cufflinks 1.381        
cufflinks 1.604        
cufflinks 1.085        
cufflinks 1.337        
cufflinks 1.677        
cufflinks 1.44        
cufflinks 2.016       High
cufflinks 1.695        
cufflinks 1.826       High
cufflinks 0.896        
cufflinks 1.301        
cufflinks 0.716       Low
cufflinks 0.782       Low

0 Strain