Gene : Pp3c22_18880 P. patens v3.3
Defline:  (1 of 1) PTHR23135:SF3 - UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE Genomic Order:  841
Name:  ? Pp3c22_18880 Secondary Identifier:  ? PAC:32902809
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_18880 0.5kb upstream 0.5kb upstream 3637 true Chr22: 12312075-12315711 Physcomitrium patens
Pp3c22_18880 0.5kb upstream 0.5kb upstream 500 false Chr22: 12315212-12315711 Physcomitrium patens
Pp3c22_18880 0.5kb downstream 0.5kb downstream 3637 true Chr22: 12311575-12315211 Physcomitrium patens
Pp3c22_18880 0.5kb downstream 0.5kb downstream 500 false Chr22: 12311575-12312074 Physcomitrium patens
Pp3c22_18880 1.0kb upstream 1.0kb upstream 4137 true Chr22: 12312075-12316211 Physcomitrium patens
Pp3c22_18880 1.0kb upstream 1.0kb upstream 1000 false Chr22: 12315212-12316211 Physcomitrium patens
Pp3c22_18880 1.0kb downstream 1.0kb downstream 4137 true Chr22: 12311075-12315211 Physcomitrium patens
Pp3c22_18880 1.0kb downstream 1.0kb downstream 1000 false Chr22: 12311075-12312074 Physcomitrium patens
Pp3c22_18880 2.0kb upstream 2.0kb upstream 5137 true Chr22: 12312075-12317211 Physcomitrium patens
Pp3c22_18880 2.0kb upstream 2.0kb upstream 2000 false Chr22: 12315212-12317211 Physcomitrium patens
Pp3c22_18880 2.0kb downstream 2.0kb downstream 5137 true Chr22: 12310075-12315211 Physcomitrium patens
Pp3c22_18880 2.0kb downstream 2.0kb downstream 2000 false Chr22: 12310075-12312074 Physcomitrium patens
Pp3c22_18880 5.0kb upstream 5.0kb upstream 8137 true Chr22: 12312075-12320211 Physcomitrium patens
Pp3c22_18880 5.0kb upstream 5.0kb upstream 5000 false Chr22: 12315212-12320211 Physcomitrium patens
Pp3c22_18880 5.0kb downstream 5.0kb downstream 8137 true Chr22: 12307075-12315211 Physcomitrium patens
Pp3c22_18880 5.0kb downstream 5.0kb downstream 5000 false Chr22: 12307075-12312074 Physcomitrium patens
Pp3c22_18880 10.0kb upstream 10.0kb upstream 13137 true Chr22: 12312075-12325211 Physcomitrium patens
Pp3c22_18880 10.0kb upstream 10.0kb upstream 10000 false Chr22: 12315212-12325211 Physcomitrium patens
Pp3c22_18880 10.0kb downstream 10.0kb downstream 13137 true Chr22: 12302075-12315211 Physcomitrium patens
Pp3c22_18880 10.0kb downstream 10.0kb downstream 10000 false Chr22: 12302075-12312074 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348383 5274 Embryophyte View MSA
123380839 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 117.313     High  
cufflinks 68.582     High  
cufflinks 90.416     High  
cufflinks 43.183     High Low
cufflinks 103.388     High  
cufflinks 96.946     High  
cufflinks 96.906     High  
cufflinks 7.524       Low
cufflinks 117.751     High  
cufflinks 118.772     High  
cufflinks 121.436     High  
cufflinks 44.03     High  
cufflinks 92.238     High  
cufflinks 111.004     High  
cufflinks 157.569     High  
cufflinks 113.746     High  
cufflinks 111.729     High  
cufflinks 105.705     High  
cufflinks 92.942     High  
cufflinks 134.793     High  
cufflinks 88.495     High  
cufflinks 152.741     High  
cufflinks 83.965     High  
cufflinks 115.503     High  
cufflinks 96.75     High  
cufflinks 82.877     High  
cufflinks 9.115       Low
cufflinks 111.705     High  
cufflinks 108.798     High  
cufflinks 155.122     High  

0 Strain