Gene : Pp3c22_18560 P. patens v3.3
Defline:  (1 of 1) PTHR21330:SF2 - E3 SUMO-PROTEIN LIGASE MMS21 Genomic Order:  830
Name:  ? Pp3c22_18560 Secondary Identifier:  ? PAC:32904071
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_18560 0.5kb upstream 0.5kb upstream 3972 true Chr22: 12006305-12010276 Physcomitrium patens
Pp3c22_18560 0.5kb upstream 0.5kb upstream 500 false Chr22: 12009777-12010276 Physcomitrium patens
Pp3c22_18560 0.5kb downstream 0.5kb downstream 3972 true Chr22: 12005805-12009776 Physcomitrium patens
Pp3c22_18560 0.5kb downstream 0.5kb downstream 500 false Chr22: 12005805-12006304 Physcomitrium patens
Pp3c22_18560 1.0kb upstream 1.0kb upstream 4472 true Chr22: 12006305-12010776 Physcomitrium patens
Pp3c22_18560 1.0kb upstream 1.0kb upstream 1000 false Chr22: 12009777-12010776 Physcomitrium patens
Pp3c22_18560 1.0kb downstream 1.0kb downstream 4472 true Chr22: 12005305-12009776 Physcomitrium patens
Pp3c22_18560 1.0kb downstream 1.0kb downstream 1000 false Chr22: 12005305-12006304 Physcomitrium patens
Pp3c22_18560 2.0kb upstream 2.0kb upstream 5472 true Chr22: 12006305-12011776 Physcomitrium patens
Pp3c22_18560 2.0kb upstream 2.0kb upstream 2000 false Chr22: 12009777-12011776 Physcomitrium patens
Pp3c22_18560 2.0kb downstream 2.0kb downstream 5472 true Chr22: 12004305-12009776 Physcomitrium patens
Pp3c22_18560 2.0kb downstream 2.0kb downstream 2000 false Chr22: 12004305-12006304 Physcomitrium patens
Pp3c22_18560 5.0kb upstream 5.0kb upstream 8472 true Chr22: 12006305-12014776 Physcomitrium patens
Pp3c22_18560 5.0kb upstream 5.0kb upstream 5000 false Chr22: 12009777-12014776 Physcomitrium patens
Pp3c22_18560 5.0kb downstream 5.0kb downstream 8472 true Chr22: 12001305-12009776 Physcomitrium patens
Pp3c22_18560 5.0kb downstream 5.0kb downstream 5000 false Chr22: 12001305-12006304 Physcomitrium patens
Pp3c22_18560 10.0kb upstream 10.0kb upstream 13472 true Chr22: 12006305-12019776 Physcomitrium patens
Pp3c22_18560 10.0kb upstream 10.0kb upstream 10000 false Chr22: 12009777-12019776 Physcomitrium patens
Pp3c22_18560 10.0kb downstream 10.0kb downstream 13472 true Chr22: 11996305-12009776 Physcomitrium patens
Pp3c22_18560 10.0kb downstream 10.0kb downstream 10000 false Chr22: 11996305-12006304 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344157 5274 Embryophyte View MSA
123424394 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.601       Low
cufflinks 1.775        
cufflinks 0.949       Low
cufflinks 0.949       Low
cufflinks 1.873        
cufflinks 1.736        
cufflinks 2.312        
cufflinks 1.493        
cufflinks 1.782        
cufflinks 2.201        
cufflinks 0.837       Low
cufflinks 1.954        
cufflinks 1.227        
cufflinks 1.4        
cufflinks 1.366        
cufflinks 1.347        
cufflinks 1.039        
cufflinks 2.95       High
cufflinks 2.231        
cufflinks 1.053        
cufflinks 2.309        
cufflinks 3.013       High
cufflinks 2.431        
cufflinks 2.107        
cufflinks 1.268        
cufflinks 1.699        
cufflinks 1.622        
cufflinks 0.782       Low
cufflinks 1.57        
cufflinks 2.396        

0 Strain