Gene : Pp3c22_21970 P. patens v3.3
Defline:  (1 of 9) PTHR23515:SF3 - HIGH AFFINITY NITRATE TRANSPORTER 2.5 Genomic Order:  945
Name:  ? Pp3c22_21970 Secondary Identifier:  ? PAC:32903936
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_21970 0.5kb upstream 0.5kb upstream 4127 true Chr22: 14645305-14649431 Physcomitrium patens
Pp3c22_21970 0.5kb upstream 0.5kb upstream 500 false Chr22: 14645305-14645804 Physcomitrium patens
Pp3c22_21970 0.5kb downstream 0.5kb downstream 4127 true Chr22: 14645805-14649931 Physcomitrium patens
Pp3c22_21970 0.5kb downstream 0.5kb downstream 500 false Chr22: 14649432-14649931 Physcomitrium patens
Pp3c22_21970 1.0kb upstream 1.0kb upstream 4627 true Chr22: 14644805-14649431 Physcomitrium patens
Pp3c22_21970 1.0kb upstream 1.0kb upstream 1000 false Chr22: 14644805-14645804 Physcomitrium patens
Pp3c22_21970 1.0kb downstream 1.0kb downstream 4627 true Chr22: 14645805-14650431 Physcomitrium patens
Pp3c22_21970 1.0kb downstream 1.0kb downstream 1000 false Chr22: 14649432-14650431 Physcomitrium patens
Pp3c22_21970 2.0kb upstream 2.0kb upstream 5627 true Chr22: 14643805-14649431 Physcomitrium patens
Pp3c22_21970 2.0kb upstream 2.0kb upstream 2000 false Chr22: 14643805-14645804 Physcomitrium patens
Pp3c22_21970 2.0kb downstream 2.0kb downstream 5627 true Chr22: 14645805-14651431 Physcomitrium patens
Pp3c22_21970 2.0kb downstream 2.0kb downstream 2000 false Chr22: 14649432-14651431 Physcomitrium patens
Pp3c22_21970 5.0kb upstream 5.0kb upstream 8627 true Chr22: 14640805-14649431 Physcomitrium patens
Pp3c22_21970 5.0kb upstream 5.0kb upstream 5000 false Chr22: 14640805-14645804 Physcomitrium patens
Pp3c22_21970 5.0kb downstream 5.0kb downstream 8627 true Chr22: 14645805-14654431 Physcomitrium patens
Pp3c22_21970 5.0kb downstream 5.0kb downstream 5000 false Chr22: 14649432-14654431 Physcomitrium patens
Pp3c22_21970 10.0kb upstream 10.0kb upstream 13627 true Chr22: 14635805-14649431 Physcomitrium patens
Pp3c22_21970 10.0kb upstream 10.0kb upstream 10000 false Chr22: 14635805-14645804 Physcomitrium patens
Pp3c22_21970 10.0kb downstream 10.0kb downstream 13627 true Chr22: 14645805-14659431 Physcomitrium patens
Pp3c22_21970 10.0kb downstream 10.0kb downstream 10000 false Chr22: 14649432-14659431 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121350710 5274 Embryophyte View MSA
123426832 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.03     Low Low
cufflinks 0.093       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 6.36        
cufflinks 26.148     High High
cufflinks 9.175        
cufflinks 27.257     High High
cufflinks 0.189       Low
cufflinks 6.297        
cufflinks 28.014     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.556        
cufflinks 1.099        
cufflinks 0.689        
cufflinks 21.495     High High
cufflinks 2.932        
cufflinks 9.502        
cufflinks 0.071     Low Low
cufflinks 3.08        
cufflinks 0.371        
cufflinks 0.141       Low
cufflinks 1.272        
cufflinks 13.041        
cufflinks 44.955     High High
cufflinks 1.063        
cufflinks 0.065       Low
cufflinks 7.721        
cufflinks 15.544        
cufflinks 3.811        
cufflinks 8.346        

0 Strain