Gene : Pp3c22_9060 P. patens v3.3
Defline:  (1 of 9) PTHR23515:SF3 - HIGH AFFINITY NITRATE TRANSPORTER 2.5 Genomic Order:  426
Name:  ? Pp3c22_9060 Secondary Identifier:  ? PAC:32904601
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_9060 0.5kb upstream 0.5kb upstream 3850 true Chr22: 5639788-5643637 Physcomitrium patens
Pp3c22_9060 0.5kb upstream 0.5kb upstream 500 false Chr22: 5643138-5643637 Physcomitrium patens
Pp3c22_9060 0.5kb downstream 0.5kb downstream 3850 true Chr22: 5639288-5643137 Physcomitrium patens
Pp3c22_9060 0.5kb downstream 0.5kb downstream 500 false Chr22: 5639288-5639787 Physcomitrium patens
Pp3c22_9060 1.0kb upstream 1.0kb upstream 4350 true Chr22: 5639788-5644137 Physcomitrium patens
Pp3c22_9060 1.0kb upstream 1.0kb upstream 1000 false Chr22: 5643138-5644137 Physcomitrium patens
Pp3c22_9060 1.0kb downstream 1.0kb downstream 4350 true Chr22: 5638788-5643137 Physcomitrium patens
Pp3c22_9060 1.0kb downstream 1.0kb downstream 1000 false Chr22: 5638788-5639787 Physcomitrium patens
Pp3c22_9060 2.0kb upstream 2.0kb upstream 5350 true Chr22: 5639788-5645137 Physcomitrium patens
Pp3c22_9060 2.0kb upstream 2.0kb upstream 2000 false Chr22: 5643138-5645137 Physcomitrium patens
Pp3c22_9060 2.0kb downstream 2.0kb downstream 5350 true Chr22: 5637788-5643137 Physcomitrium patens
Pp3c22_9060 2.0kb downstream 2.0kb downstream 2000 false Chr22: 5637788-5639787 Physcomitrium patens
Pp3c22_9060 5.0kb upstream 5.0kb upstream 8350 true Chr22: 5639788-5648137 Physcomitrium patens
Pp3c22_9060 5.0kb upstream 5.0kb upstream 5000 false Chr22: 5643138-5648137 Physcomitrium patens
Pp3c22_9060 5.0kb downstream 5.0kb downstream 8350 true Chr22: 5634788-5643137 Physcomitrium patens
Pp3c22_9060 5.0kb downstream 5.0kb downstream 5000 false Chr22: 5634788-5639787 Physcomitrium patens
Pp3c22_9060 10.0kb upstream 10.0kb upstream 13350 true Chr22: 5639788-5653137 Physcomitrium patens
Pp3c22_9060 10.0kb upstream 10.0kb upstream 10000 false Chr22: 5643138-5653137 Physcomitrium patens
Pp3c22_9060 10.0kb downstream 10.0kb downstream 13350 true Chr22: 5629788-5643137 Physcomitrium patens
Pp3c22_9060 10.0kb downstream 10.0kb downstream 10000 false Chr22: 5629788-5639787 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121350710 5274 Embryophyte View MSA
123426832 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.051     Low Low
cufflinks 3.364        
cufflinks 8.11        
cufflinks 3.201        
cufflinks 8.004        
cufflinks 5.125        
cufflinks 0.256        
cufflinks 8.43        
cufflinks 4.784        
cufflinks 9.441        
cufflinks 7.506        
cufflinks 14.391       High
cufflinks 0.017     Low Low
cufflinks 6.578        
cufflinks 0.308        
cufflinks 0.199        
cufflinks 4.472        
cufflinks 6.647        
cufflinks 2.855        
cufflinks 6.524        
cufflinks 0.006     Low Low
cufflinks 0.041     Low Low
cufflinks 1.879        
cufflinks 0.143       Low
cufflinks 3.475        
cufflinks 0.038     Low Low
cufflinks 9.313        
cufflinks 1.962        
cufflinks 4.517        
cufflinks 1.201        

0 Strain