Gene : Pp3c22_7890 P. patens v3.3
Defline:  (1 of 1) PTHR11455:SF9 - (6-4)DNA PHOTOLYASE Genomic Order:  363
Name:  ? Pp3c22_7890 Secondary Identifier:  ? PAC:32904009
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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11 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_7890 0.5kb upstream 0.5kb upstream 7320 true Chr22: 4833331-4840650 Physcomitrium patens
Pp3c22_7890 0.5kb upstream 0.5kb upstream 500 false Chr22: 4840151-4840650 Physcomitrium patens
Pp3c22_7890 0.5kb downstream 0.5kb downstream 7320 true Chr22: 4832831-4840150 Physcomitrium patens
Pp3c22_7890 0.5kb downstream 0.5kb downstream 500 false Chr22: 4832831-4833330 Physcomitrium patens
Pp3c22_7890 1.0kb upstream 1.0kb upstream 7820 true Chr22: 4833331-4841150 Physcomitrium patens
Pp3c22_7890 1.0kb upstream 1.0kb upstream 1000 false Chr22: 4840151-4841150 Physcomitrium patens
Pp3c22_7890 1.0kb downstream 1.0kb downstream 7820 true Chr22: 4832331-4840150 Physcomitrium patens
Pp3c22_7890 1.0kb downstream 1.0kb downstream 1000 false Chr22: 4832331-4833330 Physcomitrium patens
Pp3c22_7890 2.0kb upstream 2.0kb upstream 8820 true Chr22: 4833331-4842150 Physcomitrium patens
Pp3c22_7890 2.0kb upstream 2.0kb upstream 2000 false Chr22: 4840151-4842150 Physcomitrium patens
Pp3c22_7890 2.0kb downstream 2.0kb downstream 8820 true Chr22: 4831331-4840150 Physcomitrium patens
Pp3c22_7890 2.0kb downstream 2.0kb downstream 2000 false Chr22: 4831331-4833330 Physcomitrium patens
Pp3c22_7890 5.0kb upstream 5.0kb upstream 11820 true Chr22: 4833331-4845150 Physcomitrium patens
Pp3c22_7890 5.0kb upstream 5.0kb upstream 5000 false Chr22: 4840151-4845150 Physcomitrium patens
Pp3c22_7890 5.0kb downstream 5.0kb downstream 11820 true Chr22: 4828331-4840150 Physcomitrium patens
Pp3c22_7890 5.0kb downstream 5.0kb downstream 5000 false Chr22: 4828331-4833330 Physcomitrium patens
Pp3c22_7890 10.0kb upstream 10.0kb upstream 16820 true Chr22: 4833331-4850150 Physcomitrium patens
Pp3c22_7890 10.0kb upstream 10.0kb upstream 10000 false Chr22: 4840151-4850150 Physcomitrium patens
Pp3c22_7890 10.0kb downstream 10.0kb downstream 16820 true Chr22: 4823331-4840150 Physcomitrium patens
Pp3c22_7890 10.0kb downstream 10.0kb downstream 10000 false Chr22: 4823331-4833330 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346822 5274 Embryophyte View MSA
123428792 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.99        
cufflinks 84.534     High High
cufflinks 18.582        
cufflinks 42.679     High  
cufflinks 67.904     High High
cufflinks 42.601     High  
cufflinks 26.341     High  
cufflinks 55.667     High High
cufflinks 37.583     High  
cufflinks 30.438     High  
cufflinks 49.022     High  
cufflinks 29.693     High  
cufflinks 12.698       Low
cufflinks 22.784     High  
cufflinks 19.853     High  
cufflinks 29.512     High  
cufflinks 17.694        
cufflinks 17.563        
cufflinks 58.888     High High
cufflinks 6.58       Low
cufflinks 79.78     High High
cufflinks 24.586     High  
cufflinks 23.784     High  
cufflinks 19.444     High  
cufflinks 42.274     High  
cufflinks 11.927       Low
cufflinks 31.178     High  
cufflinks 42.875     High  
cufflinks 22.728     High  
cufflinks 12.047       Low

0 Strain