Gene : Pp3c22_3050 P. patens v3.3
Defline:  (1 of 2) KOG4268 - Uncharacterized conserved protein containing PAP2 domain Genomic Order:  140
Name:  ? Pp3c22_3050 Secondary Identifier:  ? PAC:32903210
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens TRIGLSYN-PWY Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_3050 0.5kb upstream 0.5kb upstream 3415 true Chr22: 2038147-2041561 Physcomitrium patens
Pp3c22_3050 0.5kb upstream 0.5kb upstream 500 false Chr22: 2038147-2038646 Physcomitrium patens
Pp3c22_3050 0.5kb downstream 0.5kb downstream 3415 true Chr22: 2038647-2042061 Physcomitrium patens
Pp3c22_3050 0.5kb downstream 0.5kb downstream 500 false Chr22: 2041562-2042061 Physcomitrium patens
Pp3c22_3050 1.0kb upstream 1.0kb upstream 3915 true Chr22: 2037647-2041561 Physcomitrium patens
Pp3c22_3050 1.0kb upstream 1.0kb upstream 1000 false Chr22: 2037647-2038646 Physcomitrium patens
Pp3c22_3050 1.0kb downstream 1.0kb downstream 3915 true Chr22: 2038647-2042561 Physcomitrium patens
Pp3c22_3050 1.0kb downstream 1.0kb downstream 1000 false Chr22: 2041562-2042561 Physcomitrium patens
Pp3c22_3050 2.0kb upstream 2.0kb upstream 4915 true Chr22: 2036647-2041561 Physcomitrium patens
Pp3c22_3050 2.0kb upstream 2.0kb upstream 2000 false Chr22: 2036647-2038646 Physcomitrium patens
Pp3c22_3050 2.0kb downstream 2.0kb downstream 4915 true Chr22: 2038647-2043561 Physcomitrium patens
Pp3c22_3050 2.0kb downstream 2.0kb downstream 2000 false Chr22: 2041562-2043561 Physcomitrium patens
Pp3c22_3050 5.0kb upstream 5.0kb upstream 7915 true Chr22: 2033647-2041561 Physcomitrium patens
Pp3c22_3050 5.0kb upstream 5.0kb upstream 5000 false Chr22: 2033647-2038646 Physcomitrium patens
Pp3c22_3050 5.0kb downstream 5.0kb downstream 7915 true Chr22: 2038647-2046561 Physcomitrium patens
Pp3c22_3050 5.0kb downstream 5.0kb downstream 5000 false Chr22: 2041562-2046561 Physcomitrium patens
Pp3c22_3050 10.0kb upstream 10.0kb upstream 12915 true Chr22: 2028647-2041561 Physcomitrium patens
Pp3c22_3050 10.0kb upstream 10.0kb upstream 10000 false Chr22: 2028647-2038646 Physcomitrium patens
Pp3c22_3050 10.0kb downstream 10.0kb downstream 12915 true Chr22: 2038647-2051561 Physcomitrium patens
Pp3c22_3050 10.0kb downstream 10.0kb downstream 10000 false Chr22: 2041562-2051561 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121349083 5274 Embryophyte View MSA
123381157 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.497        
cufflinks 0.483        
cufflinks 0.576        
cufflinks 0.748        
cufflinks 0.879       High
cufflinks 1.008       High
cufflinks 0.201       Low
cufflinks 0.682        
cufflinks 0.621        
cufflinks 0.485        
cufflinks 0.191       Low
cufflinks 0.578        
cufflinks 0.597        
cufflinks 0.952       High
cufflinks 0.608        
cufflinks 0.165       Low
cufflinks 0.494        
cufflinks 0.184       Low
cufflinks 0.415        
cufflinks 0.865       High
cufflinks 0.792        
cufflinks 0.503        
cufflinks 0.433        
cufflinks 0.176       Low
cufflinks 0.406        
cufflinks 0.673        
cufflinks 0.825        
cufflinks 0.516        
cufflinks 0.581        
cufflinks 0.489        

0 Strain