Gene : Pp3c22_3070 P. patens v3.3
Defline:  (1 of 1) PF01713//PF13041//PF13812 - Smr domain (Smr) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  141
Name:  ? Pp3c22_3070 Secondary Identifier:  ? PAC:32903707
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_3070 0.5kb upstream 0.5kb upstream 6406 true Chr22: 2045221-2051626 Physcomitrium patens
Pp3c22_3070 0.5kb upstream 0.5kb upstream 500 false Chr22: 2045221-2045720 Physcomitrium patens
Pp3c22_3070 0.5kb downstream 0.5kb downstream 6406 true Chr22: 2045721-2052126 Physcomitrium patens
Pp3c22_3070 0.5kb downstream 0.5kb downstream 500 false Chr22: 2051627-2052126 Physcomitrium patens
Pp3c22_3070 1.0kb upstream 1.0kb upstream 6906 true Chr22: 2044721-2051626 Physcomitrium patens
Pp3c22_3070 1.0kb upstream 1.0kb upstream 1000 false Chr22: 2044721-2045720 Physcomitrium patens
Pp3c22_3070 1.0kb downstream 1.0kb downstream 6906 true Chr22: 2045721-2052626 Physcomitrium patens
Pp3c22_3070 1.0kb downstream 1.0kb downstream 1000 false Chr22: 2051627-2052626 Physcomitrium patens
Pp3c22_3070 2.0kb upstream 2.0kb upstream 7906 true Chr22: 2043721-2051626 Physcomitrium patens
Pp3c22_3070 2.0kb upstream 2.0kb upstream 2000 false Chr22: 2043721-2045720 Physcomitrium patens
Pp3c22_3070 2.0kb downstream 2.0kb downstream 7906 true Chr22: 2045721-2053626 Physcomitrium patens
Pp3c22_3070 2.0kb downstream 2.0kb downstream 2000 false Chr22: 2051627-2053626 Physcomitrium patens
Pp3c22_3070 5.0kb upstream 5.0kb upstream 10906 true Chr22: 2040721-2051626 Physcomitrium patens
Pp3c22_3070 5.0kb upstream 5.0kb upstream 5000 false Chr22: 2040721-2045720 Physcomitrium patens
Pp3c22_3070 5.0kb downstream 5.0kb downstream 10906 true Chr22: 2045721-2056626 Physcomitrium patens
Pp3c22_3070 5.0kb downstream 5.0kb downstream 5000 false Chr22: 2051627-2056626 Physcomitrium patens
Pp3c22_3070 10.0kb upstream 10.0kb upstream 15906 true Chr22: 2035721-2051626 Physcomitrium patens
Pp3c22_3070 10.0kb upstream 10.0kb upstream 10000 false Chr22: 2035721-2045720 Physcomitrium patens
Pp3c22_3070 10.0kb downstream 10.0kb downstream 15906 true Chr22: 2045721-2061626 Physcomitrium patens
Pp3c22_3070 10.0kb downstream 10.0kb downstream 10000 false Chr22: 2051627-2061626 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429046 5275 Viridiplantae View MSA
121347187 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.876        
cufflinks 1.485       High
cufflinks 0.658        
cufflinks 1.32        
cufflinks 0.807        
cufflinks 0.88        
cufflinks 0.622        
cufflinks 0.234       Low
cufflinks 1.178        
cufflinks 1.103        
cufflinks 0.526        
cufflinks 0.932        
cufflinks 0.647        
cufflinks 1.285        
cufflinks 1.858       High
cufflinks 1.017        
cufflinks 0.411       Low
cufflinks 1.389        
cufflinks 0.225       Low
cufflinks 1.414       High
cufflinks 0.817        
cufflinks 0.967        
cufflinks 0.994        
cufflinks 1.767       High
cufflinks 1.267        
cufflinks 0.73        
cufflinks 0.834        
cufflinks 0.955        
cufflinks 0.268       Low
cufflinks 0.804        

0 Strain