Gene : Pp3c22_20980 P. patens v3.3
Defline:  (1 of 2) PTHR12125:SF5 - PROTEIN C14B1.3 Genomic Order:  902
Name:  ? Pp3c22_20980 Secondary Identifier:  ? PAC:32903212
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_20980 0.5kb upstream 0.5kb upstream 4742 true Chr22: 14066268-14071009 Physcomitrium patens
Pp3c22_20980 0.5kb upstream 0.5kb upstream 500 false Chr22: 14070510-14071009 Physcomitrium patens
Pp3c22_20980 0.5kb downstream 0.5kb downstream 4742 true Chr22: 14065768-14070509 Physcomitrium patens
Pp3c22_20980 0.5kb downstream 0.5kb downstream 500 false Chr22: 14065768-14066267 Physcomitrium patens
Pp3c22_20980 1.0kb upstream 1.0kb upstream 5242 true Chr22: 14066268-14071509 Physcomitrium patens
Pp3c22_20980 1.0kb upstream 1.0kb upstream 1000 false Chr22: 14070510-14071509 Physcomitrium patens
Pp3c22_20980 1.0kb downstream 1.0kb downstream 5242 true Chr22: 14065268-14070509 Physcomitrium patens
Pp3c22_20980 1.0kb downstream 1.0kb downstream 1000 false Chr22: 14065268-14066267 Physcomitrium patens
Pp3c22_20980 2.0kb upstream 2.0kb upstream 6242 true Chr22: 14066268-14072509 Physcomitrium patens
Pp3c22_20980 2.0kb upstream 2.0kb upstream 2000 false Chr22: 14070510-14072509 Physcomitrium patens
Pp3c22_20980 2.0kb downstream 2.0kb downstream 6242 true Chr22: 14064268-14070509 Physcomitrium patens
Pp3c22_20980 2.0kb downstream 2.0kb downstream 2000 false Chr22: 14064268-14066267 Physcomitrium patens
Pp3c22_20980 5.0kb upstream 5.0kb upstream 9242 true Chr22: 14066268-14075509 Physcomitrium patens
Pp3c22_20980 5.0kb upstream 5.0kb upstream 5000 false Chr22: 14070510-14075509 Physcomitrium patens
Pp3c22_20980 5.0kb downstream 5.0kb downstream 9242 true Chr22: 14061268-14070509 Physcomitrium patens
Pp3c22_20980 5.0kb downstream 5.0kb downstream 5000 false Chr22: 14061268-14066267 Physcomitrium patens
Pp3c22_20980 10.0kb upstream 10.0kb upstream 14242 true Chr22: 14066268-14080509 Physcomitrium patens
Pp3c22_20980 10.0kb upstream 10.0kb upstream 10000 false Chr22: 14070510-14080509 Physcomitrium patens
Pp3c22_20980 10.0kb downstream 10.0kb downstream 14242 true Chr22: 14056268-14070509 Physcomitrium patens
Pp3c22_20980 10.0kb downstream 10.0kb downstream 10000 false Chr22: 14056268-14066267 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342776 5274 Embryophyte View MSA
123426975 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.106       Low
cufflinks 4.797        
cufflinks 11.017        
cufflinks 3.238        
cufflinks 15.874        
cufflinks 3.654        
cufflinks 4.744        
cufflinks 18.749       High
cufflinks 23.188     High High
cufflinks 16.846        
cufflinks 8.146        
cufflinks 0.683       Low
cufflinks 8.582        
cufflinks 6.274        
cufflinks 0.59       Low
cufflinks 6.578        
cufflinks 11.66        
cufflinks 12.207        
cufflinks 12.922        
cufflinks 7.757        
cufflinks 2.292       Low
cufflinks 22.905     High High
cufflinks 24.587     High High
cufflinks 1.216       Low
cufflinks 13.345        
cufflinks 4.462        
cufflinks 1.844       Low
cufflinks 15.362        
cufflinks 3.334        
cufflinks 13.482        

0 Strain