Gene : Pp3c22_21230 P. patens v3.3
Defline:  (1 of 27) PF14223 - gag-polypeptide of LTR copia-type (UBN2) Genomic Order:  915
Name:  ? Pp3c22_21230 Secondary Identifier:  ? PAC:32904563
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_21230 0.5kb upstream 0.5kb upstream 1797 true Chr22: 14250993-14252789 Physcomitrium patens
Pp3c22_21230 0.5kb upstream 0.5kb upstream 500 false Chr22: 14252290-14252789 Physcomitrium patens
Pp3c22_21230 0.5kb downstream 0.5kb downstream 1797 true Chr22: 14250493-14252289 Physcomitrium patens
Pp3c22_21230 0.5kb downstream 0.5kb downstream 500 false Chr22: 14250493-14250992 Physcomitrium patens
Pp3c22_21230 1.0kb upstream 1.0kb upstream 2297 true Chr22: 14250993-14253289 Physcomitrium patens
Pp3c22_21230 1.0kb upstream 1.0kb upstream 1000 false Chr22: 14252290-14253289 Physcomitrium patens
Pp3c22_21230 1.0kb downstream 1.0kb downstream 2297 true Chr22: 14249993-14252289 Physcomitrium patens
Pp3c22_21230 1.0kb downstream 1.0kb downstream 1000 false Chr22: 14249993-14250992 Physcomitrium patens
Pp3c22_21230 2.0kb upstream 2.0kb upstream 3297 true Chr22: 14250993-14254289 Physcomitrium patens
Pp3c22_21230 2.0kb upstream 2.0kb upstream 2000 false Chr22: 14252290-14254289 Physcomitrium patens
Pp3c22_21230 2.0kb downstream 2.0kb downstream 3297 true Chr22: 14248993-14252289 Physcomitrium patens
Pp3c22_21230 2.0kb downstream 2.0kb downstream 2000 false Chr22: 14248993-14250992 Physcomitrium patens
Pp3c22_21230 5.0kb upstream 5.0kb upstream 6297 true Chr22: 14250993-14257289 Physcomitrium patens
Pp3c22_21230 5.0kb upstream 5.0kb upstream 5000 false Chr22: 14252290-14257289 Physcomitrium patens
Pp3c22_21230 5.0kb downstream 5.0kb downstream 6297 true Chr22: 14245993-14252289 Physcomitrium patens
Pp3c22_21230 5.0kb downstream 5.0kb downstream 5000 false Chr22: 14245993-14250992 Physcomitrium patens
Pp3c22_21230 10.0kb upstream 10.0kb upstream 11297 true Chr22: 14250993-14262289 Physcomitrium patens
Pp3c22_21230 10.0kb upstream 10.0kb upstream 10000 false Chr22: 14252290-14262289 Physcomitrium patens
Pp3c22_21230 10.0kb downstream 10.0kb downstream 11297 true Chr22: 14240993-14252289 Physcomitrium patens
Pp3c22_21230 10.0kb downstream 10.0kb downstream 10000 false Chr22: 14240993-14250992 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336934 5274 Embryophyte View MSA
123373736 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.136        
cufflinks 0.041     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.046     Low  
cufflinks 0.032     Low Low
cufflinks 0.162        
cufflinks 0.133        
cufflinks 0.062     Low  
cufflinks 0.065     Low  
cufflinks 0.036     Low Low
cufflinks 0.2        
cufflinks 0.912       High
cufflinks 0.263       High
cufflinks 0.084     Low  
cufflinks 0.083        
cufflinks 0.113        
cufflinks 0.058        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.134        
cufflinks 0.591       High
cufflinks 0.119        
cufflinks 0.037     Low Low
cufflinks 0.107        
cufflinks 0.03     Low Low
cufflinks 0.076        
cufflinks 0.148        
cufflinks 0.098        
cufflinks 0.039     Low Low
cufflinks 0.027     Low Low
cufflinks 0.095        

0 Strain