Gene : Pp3c22_18190 P. patens v3.3
Defline:  (1 of 4) KOG4585 - Predicted transposase Genomic Order:  816
Name:  ? Pp3c22_18190 Secondary Identifier:  ? PAC:32904709
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c22_18190 0.5kb upstream 0.5kb upstream 3556 true Chr22: 11710716-11714271 Physcomitrium patens
Pp3c22_18190 0.5kb upstream 0.5kb upstream 500 false Chr22: 11713772-11714271 Physcomitrium patens
Pp3c22_18190 0.5kb downstream 0.5kb downstream 3556 true Chr22: 11710216-11713771 Physcomitrium patens
Pp3c22_18190 0.5kb downstream 0.5kb downstream 500 false Chr22: 11710216-11710715 Physcomitrium patens
Pp3c22_18190 1.0kb upstream 1.0kb upstream 4056 true Chr22: 11710716-11714771 Physcomitrium patens
Pp3c22_18190 1.0kb upstream 1.0kb upstream 1000 false Chr22: 11713772-11714771 Physcomitrium patens
Pp3c22_18190 1.0kb downstream 1.0kb downstream 4056 true Chr22: 11709716-11713771 Physcomitrium patens
Pp3c22_18190 1.0kb downstream 1.0kb downstream 1000 false Chr22: 11709716-11710715 Physcomitrium patens
Pp3c22_18190 2.0kb upstream 2.0kb upstream 5056 true Chr22: 11710716-11715771 Physcomitrium patens
Pp3c22_18190 2.0kb upstream 2.0kb upstream 2000 false Chr22: 11713772-11715771 Physcomitrium patens
Pp3c22_18190 2.0kb downstream 2.0kb downstream 5056 true Chr22: 11708716-11713771 Physcomitrium patens
Pp3c22_18190 2.0kb downstream 2.0kb downstream 2000 false Chr22: 11708716-11710715 Physcomitrium patens
Pp3c22_18190 5.0kb upstream 5.0kb upstream 8056 true Chr22: 11710716-11718771 Physcomitrium patens
Pp3c22_18190 5.0kb upstream 5.0kb upstream 5000 false Chr22: 11713772-11718771 Physcomitrium patens
Pp3c22_18190 5.0kb downstream 5.0kb downstream 8056 true Chr22: 11705716-11713771 Physcomitrium patens
Pp3c22_18190 5.0kb downstream 5.0kb downstream 5000 false Chr22: 11705716-11710715 Physcomitrium patens
Pp3c22_18190 10.0kb upstream 10.0kb upstream 13056 true Chr22: 11710716-11723771 Physcomitrium patens
Pp3c22_18190 10.0kb upstream 10.0kb upstream 10000 false Chr22: 11713772-11723771 Physcomitrium patens
Pp3c22_18190 10.0kb downstream 10.0kb downstream 13056 true Chr22: 11700716-11713771 Physcomitrium patens
Pp3c22_18190 10.0kb downstream 10.0kb downstream 10000 false Chr22: 11700716-11710715 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348117 5274 Embryophyte View MSA
123380731 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.722        
cufflinks 3.895       Low
cufflinks 7.936        
cufflinks 10.919       High
cufflinks 7.087        
cufflinks 3.143       Low
cufflinks 4.861       Low
cufflinks 11.302       High
cufflinks 7.836        
cufflinks 8.998        
cufflinks 8.445        
cufflinks 7.64        
cufflinks 6.852        
cufflinks 10.926       High
cufflinks 5.566        
cufflinks 7.132        
cufflinks 9.933        
cufflinks 9.865        
cufflinks 7.95        
cufflinks 8.867        
cufflinks 7.164        
cufflinks 9.867        
cufflinks 5.547        
cufflinks 10.6       High
cufflinks 7.232        
cufflinks 8.447        
cufflinks 9.742        
cufflinks 12.614       High
cufflinks 3.117       Low
cufflinks 5.349        

0 Strain