Gene : Pp3c23_21540 P. patens v3.3
Defline:  (1 of 1) PF02958 - Ecdysteroid kinase (EcKinase) Genomic Order:  945
Name:  ? Pp3c23_21540 Secondary Identifier:  ? PAC:32949622
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c23_21540 0.5kb upstream 0.5kb upstream 3133 true Chr23: 14316718-14319850 Physcomitrium patens
Pp3c23_21540 0.5kb upstream 0.5kb upstream 500 false Chr23: 14319351-14319850 Physcomitrium patens
Pp3c23_21540 0.5kb downstream 0.5kb downstream 3133 true Chr23: 14316218-14319350 Physcomitrium patens
Pp3c23_21540 0.5kb downstream 0.5kb downstream 500 false Chr23: 14316218-14316717 Physcomitrium patens
Pp3c23_21540 1.0kb upstream 1.0kb upstream 3633 true Chr23: 14316718-14320350 Physcomitrium patens
Pp3c23_21540 1.0kb upstream 1.0kb upstream 1000 false Chr23: 14319351-14320350 Physcomitrium patens
Pp3c23_21540 1.0kb downstream 1.0kb downstream 3633 true Chr23: 14315718-14319350 Physcomitrium patens
Pp3c23_21540 1.0kb downstream 1.0kb downstream 1000 false Chr23: 14315718-14316717 Physcomitrium patens
Pp3c23_21540 2.0kb upstream 2.0kb upstream 4633 true Chr23: 14316718-14321350 Physcomitrium patens
Pp3c23_21540 2.0kb upstream 2.0kb upstream 2000 false Chr23: 14319351-14321350 Physcomitrium patens
Pp3c23_21540 2.0kb downstream 2.0kb downstream 4633 true Chr23: 14314718-14319350 Physcomitrium patens
Pp3c23_21540 2.0kb downstream 2.0kb downstream 2000 false Chr23: 14314718-14316717 Physcomitrium patens
Pp3c23_21540 5.0kb upstream 5.0kb upstream 7633 true Chr23: 14316718-14324350 Physcomitrium patens
Pp3c23_21540 5.0kb upstream 5.0kb upstream 5000 false Chr23: 14319351-14324350 Physcomitrium patens
Pp3c23_21540 5.0kb downstream 5.0kb downstream 7633 true Chr23: 14311718-14319350 Physcomitrium patens
Pp3c23_21540 5.0kb downstream 5.0kb downstream 5000 false Chr23: 14311718-14316717 Physcomitrium patens
Pp3c23_21540 10.0kb upstream 10.0kb upstream 12633 true Chr23: 14316718-14329350 Physcomitrium patens
Pp3c23_21540 10.0kb upstream 10.0kb upstream 10000 false Chr23: 14319351-14329350 Physcomitrium patens
Pp3c23_21540 10.0kb downstream 10.0kb downstream 12633 true Chr23: 14306718-14319350 Physcomitrium patens
Pp3c23_21540 10.0kb downstream 10.0kb downstream 10000 false Chr23: 14306718-14316717 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121331631 5274 Embryophyte Singleton cluster - no MSA
123427441 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.873     High  
cufflinks 23.398     High  
cufflinks 21.251        
cufflinks 21.562     High  
cufflinks 18.206        
cufflinks 28.004     High High
cufflinks 18.379        
cufflinks 8.568       Low
cufflinks 16.264        
cufflinks 16.135        
cufflinks 24.109     High High
cufflinks 12.08       Low
cufflinks 22.237     High  
cufflinks 18.868        
cufflinks 8.918       Low
cufflinks 14.992        
cufflinks 12.843       Low
cufflinks 17.944        
cufflinks 19.031        
cufflinks 15.608        
cufflinks 17.39        
cufflinks 24.212     High High
cufflinks 23.3     High  
cufflinks 17.135        
cufflinks 23.939     High High
cufflinks 19.109        
cufflinks 18.132        
cufflinks 20.66     High  
cufflinks 8.81       Low
cufflinks 16.68        

0 Strain