Gene : Pp3c24_10810 P. patens v3.3
Defline:  (1 of 3) PF00076//PF07744 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // SPOC domain (SPOC) Genomic Order:  474
Name:  ? Pp3c24_10810 Secondary Identifier:  ? PAC:32908998
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0 Pathways

Genomics

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Expression

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9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c24_10810 0.5kb upstream 0.5kb upstream 8919 true Chr24: 7436183-7445101 Physcomitrium patens
Pp3c24_10810 0.5kb upstream 0.5kb upstream 500 false Chr24: 7444602-7445101 Physcomitrium patens
Pp3c24_10810 0.5kb downstream 0.5kb downstream 8919 true Chr24: 7435683-7444601 Physcomitrium patens
Pp3c24_10810 0.5kb downstream 0.5kb downstream 500 false Chr24: 7435683-7436182 Physcomitrium patens
Pp3c24_10810 1.0kb upstream 1.0kb upstream 9419 true Chr24: 7436183-7445601 Physcomitrium patens
Pp3c24_10810 1.0kb upstream 1.0kb upstream 1000 false Chr24: 7444602-7445601 Physcomitrium patens
Pp3c24_10810 1.0kb downstream 1.0kb downstream 9419 true Chr24: 7435183-7444601 Physcomitrium patens
Pp3c24_10810 1.0kb downstream 1.0kb downstream 1000 false Chr24: 7435183-7436182 Physcomitrium patens
Pp3c24_10810 2.0kb upstream 2.0kb upstream 10419 true Chr24: 7436183-7446601 Physcomitrium patens
Pp3c24_10810 2.0kb upstream 2.0kb upstream 2000 false Chr24: 7444602-7446601 Physcomitrium patens
Pp3c24_10810 2.0kb downstream 2.0kb downstream 10419 true Chr24: 7434183-7444601 Physcomitrium patens
Pp3c24_10810 2.0kb downstream 2.0kb downstream 2000 false Chr24: 7434183-7436182 Physcomitrium patens
Pp3c24_10810 5.0kb upstream 5.0kb upstream 13419 true Chr24: 7436183-7449601 Physcomitrium patens
Pp3c24_10810 5.0kb upstream 5.0kb upstream 5000 false Chr24: 7444602-7449601 Physcomitrium patens
Pp3c24_10810 5.0kb downstream 5.0kb downstream 13419 true Chr24: 7431183-7444601 Physcomitrium patens
Pp3c24_10810 5.0kb downstream 5.0kb downstream 5000 false Chr24: 7431183-7436182 Physcomitrium patens
Pp3c24_10810 10.0kb upstream 10.0kb upstream 18419 true Chr24: 7436183-7454601 Physcomitrium patens
Pp3c24_10810 10.0kb upstream 10.0kb upstream 10000 false Chr24: 7444602-7454601 Physcomitrium patens
Pp3c24_10810 10.0kb downstream 10.0kb downstream 18419 true Chr24: 7426183-7444601 Physcomitrium patens
Pp3c24_10810 10.0kb downstream 10.0kb downstream 10000 false Chr24: 7426183-7436182 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121349744 5274 Embryophyte View MSA
123381424 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.062       Low
cufflinks 6.365        
cufflinks 8.125        
cufflinks 8.636        
cufflinks 4.467       Low
cufflinks 8.82        
cufflinks 7.221        
cufflinks 6.058       Low
cufflinks 7.206        
cufflinks 7.006        
cufflinks 10.292        
cufflinks 8.674        
cufflinks 7.492        
cufflinks 7.654        
cufflinks 8.81        
cufflinks 5.237       Low
cufflinks 8.889        
cufflinks 9.869        
cufflinks 7.215        
cufflinks 7.239        
cufflinks 18.748     High High
cufflinks 7.846        
cufflinks 8.704        
cufflinks 7.015        
cufflinks 6.396        
cufflinks 8.992        
cufflinks 10.431       High
cufflinks 8.354        
cufflinks 8.492        
cufflinks 14.227       High

0 Strain