Gene : Pp3c24_70 P. patens v3.3
Defline:  (1 of 7) PF00270//PF00271//PF04408//PF07717 - DEAD/DEAH box helicase (DEAD) // Helicase conserved C-terminal domain (Helicase_C) // Helicase associated domain (HA2) (HA2) // Oligonucleotide/oligosaccharide-binding (OB)-fold (OB_NTP_bind) Genomic Order:  5
Name:  ? Pp3c24_70 Secondary Identifier:  ? PAC:32908887
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c24_70 0.5kb upstream 0.5kb upstream 4479 true Chr24: 31711-36189 Physcomitrium patens
Pp3c24_70 0.5kb upstream 0.5kb upstream 500 false Chr24: 31711-32210 Physcomitrium patens
Pp3c24_70 0.5kb downstream 0.5kb downstream 4479 true Chr24: 32211-36689 Physcomitrium patens
Pp3c24_70 0.5kb downstream 0.5kb downstream 500 false Chr24: 36190-36689 Physcomitrium patens
Pp3c24_70 1.0kb upstream 1.0kb upstream 4979 true Chr24: 31211-36189 Physcomitrium patens
Pp3c24_70 1.0kb upstream 1.0kb upstream 1000 false Chr24: 31211-32210 Physcomitrium patens
Pp3c24_70 1.0kb downstream 1.0kb downstream 4979 true Chr24: 32211-37189 Physcomitrium patens
Pp3c24_70 1.0kb downstream 1.0kb downstream 1000 false Chr24: 36190-37189 Physcomitrium patens
Pp3c24_70 2.0kb upstream 2.0kb upstream 5979 true Chr24: 30211-36189 Physcomitrium patens
Pp3c24_70 2.0kb upstream 2.0kb upstream 2000 false Chr24: 30211-32210 Physcomitrium patens
Pp3c24_70 2.0kb downstream 2.0kb downstream 5979 true Chr24: 32211-38189 Physcomitrium patens
Pp3c24_70 2.0kb downstream 2.0kb downstream 2000 false Chr24: 36190-38189 Physcomitrium patens
Pp3c24_70 5.0kb upstream 5.0kb upstream 8979 true Chr24: 27211-36189 Physcomitrium patens
Pp3c24_70 5.0kb upstream 5.0kb upstream 5000 false Chr24: 27211-32210 Physcomitrium patens
Pp3c24_70 5.0kb downstream 5.0kb downstream 8979 true Chr24: 32211-41189 Physcomitrium patens
Pp3c24_70 5.0kb downstream 5.0kb downstream 5000 false Chr24: 36190-41189 Physcomitrium patens
Pp3c24_70 10.0kb upstream 10.0kb upstream 13979 true Chr24: 22211-36189 Physcomitrium patens
Pp3c24_70 10.0kb upstream 10.0kb upstream 10000 false Chr24: 22211-32210 Physcomitrium patens
Pp3c24_70 10.0kb downstream 10.0kb downstream 13979 true Chr24: 32211-46189 Physcomitrium patens
Pp3c24_70 10.0kb downstream 10.0kb downstream 10000 false Chr24: 36190-46189 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344460 5274 Embryophyte View MSA
123427564 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.028       Low
cufflinks 5.001        
cufflinks 4.115        
cufflinks 7.605       High
cufflinks 8.704       High
cufflinks 5.161        
cufflinks 1.776       Low
cufflinks 6.403        
cufflinks 1.695       Low
cufflinks 5.299        
cufflinks 5.334        
cufflinks 5.339        
cufflinks 2.909        
cufflinks 4.124        
cufflinks 4.298        
cufflinks 5.162        
cufflinks 4.486        
cufflinks 6.433        
cufflinks 4.815        
cufflinks 1.653       Low
cufflinks 4.336        
cufflinks 0.84       Low
cufflinks 4.698        
cufflinks 5.092        
cufflinks 3.975        
cufflinks 7.797       High
cufflinks 4.718        
cufflinks 5.789        
cufflinks 5.751        
cufflinks 3.469        

0 Strain