Gene : Pp3c24_4020 P. patens v3.3
Defline:  (1 of 3) PTHR19303 - TRANSPOSON Genomic Order:  146
Name:  ? Pp3c24_4020 Secondary Identifier:  ? PAC:32910499
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c24_4020 0.5kb upstream 0.5kb upstream 4872 true Chr24: 2982939-2987810 Physcomitrium patens
Pp3c24_4020 0.5kb upstream 0.5kb upstream 500 false Chr24: 2987311-2987810 Physcomitrium patens
Pp3c24_4020 0.5kb downstream 0.5kb downstream 4872 true Chr24: 2982439-2987310 Physcomitrium patens
Pp3c24_4020 0.5kb downstream 0.5kb downstream 500 false Chr24: 2982439-2982938 Physcomitrium patens
Pp3c24_4020 1.0kb upstream 1.0kb upstream 5372 true Chr24: 2982939-2988310 Physcomitrium patens
Pp3c24_4020 1.0kb upstream 1.0kb upstream 1000 false Chr24: 2987311-2988310 Physcomitrium patens
Pp3c24_4020 1.0kb downstream 1.0kb downstream 5372 true Chr24: 2981939-2987310 Physcomitrium patens
Pp3c24_4020 1.0kb downstream 1.0kb downstream 1000 false Chr24: 2981939-2982938 Physcomitrium patens
Pp3c24_4020 2.0kb upstream 2.0kb upstream 6372 true Chr24: 2982939-2989310 Physcomitrium patens
Pp3c24_4020 2.0kb upstream 2.0kb upstream 2000 false Chr24: 2987311-2989310 Physcomitrium patens
Pp3c24_4020 2.0kb downstream 2.0kb downstream 6372 true Chr24: 2980939-2987310 Physcomitrium patens
Pp3c24_4020 2.0kb downstream 2.0kb downstream 2000 false Chr24: 2980939-2982938 Physcomitrium patens
Pp3c24_4020 5.0kb upstream 5.0kb upstream 9372 true Chr24: 2982939-2992310 Physcomitrium patens
Pp3c24_4020 5.0kb upstream 5.0kb upstream 5000 false Chr24: 2987311-2992310 Physcomitrium patens
Pp3c24_4020 5.0kb downstream 5.0kb downstream 9372 true Chr24: 2977939-2987310 Physcomitrium patens
Pp3c24_4020 5.0kb downstream 5.0kb downstream 5000 false Chr24: 2977939-2982938 Physcomitrium patens
Pp3c24_4020 10.0kb upstream 10.0kb upstream 14372 true Chr24: 2982939-2997310 Physcomitrium patens
Pp3c24_4020 10.0kb upstream 10.0kb upstream 10000 false Chr24: 2987311-2997310 Physcomitrium patens
Pp3c24_4020 10.0kb downstream 10.0kb downstream 14372 true Chr24: 2972939-2987310 Physcomitrium patens
Pp3c24_4020 10.0kb downstream 10.0kb downstream 10000 false Chr24: 2972939-2982938 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336696 5274 Embryophyte View MSA
123373509 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.304        
cufflinks 3.358        
cufflinks 6.699        
cufflinks 6.823        
cufflinks 2.604       Low
cufflinks 3.534        
cufflinks 4.142        
cufflinks 3.503        
cufflinks 7.044        
cufflinks 8.351       High
cufflinks 4.97        
cufflinks 5.061        
cufflinks 5.737        
cufflinks 4.02        
cufflinks 2.703       Low
cufflinks 3.822        
cufflinks 10.553       High
cufflinks 2.395       Low
cufflinks 5.31        
cufflinks 6.477        
cufflinks 3.996        
cufflinks 2.284       Low
cufflinks 7.289       High
cufflinks 7.799       High
cufflinks 3.703        
cufflinks 6.653        
cufflinks 2.872       Low
cufflinks 5.948        
cufflinks 4.164        
cufflinks 5.613        

0 Strain