Gene : Pp3c24_3750 P. patens v3.3
Defline:  (1 of 2) 6.3.4.19 - tRNA(Ile)-lysidine synthetase / Isoleucine-specific transfer ribonucleate lysidine synthetase Genomic Order:  138
Name:  ? Pp3c24_3750 Secondary Identifier:  ? PAC:32910843
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c24_3750 0.5kb upstream 0.5kb upstream 3922 true Chr24: 2862897-2866818 Physcomitrium patens
Pp3c24_3750 0.5kb upstream 0.5kb upstream 500 false Chr24: 2862897-2863396 Physcomitrium patens
Pp3c24_3750 0.5kb downstream 0.5kb downstream 3922 true Chr24: 2863397-2867318 Physcomitrium patens
Pp3c24_3750 0.5kb downstream 0.5kb downstream 500 false Chr24: 2866819-2867318 Physcomitrium patens
Pp3c24_3750 1.0kb upstream 1.0kb upstream 4422 true Chr24: 2862397-2866818 Physcomitrium patens
Pp3c24_3750 1.0kb upstream 1.0kb upstream 1000 false Chr24: 2862397-2863396 Physcomitrium patens
Pp3c24_3750 1.0kb downstream 1.0kb downstream 4422 true Chr24: 2863397-2867818 Physcomitrium patens
Pp3c24_3750 1.0kb downstream 1.0kb downstream 1000 false Chr24: 2866819-2867818 Physcomitrium patens
Pp3c24_3750 2.0kb upstream 2.0kb upstream 5422 true Chr24: 2861397-2866818 Physcomitrium patens
Pp3c24_3750 2.0kb upstream 2.0kb upstream 2000 false Chr24: 2861397-2863396 Physcomitrium patens
Pp3c24_3750 2.0kb downstream 2.0kb downstream 5422 true Chr24: 2863397-2868818 Physcomitrium patens
Pp3c24_3750 2.0kb downstream 2.0kb downstream 2000 false Chr24: 2866819-2868818 Physcomitrium patens
Pp3c24_3750 5.0kb upstream 5.0kb upstream 8422 true Chr24: 2858397-2866818 Physcomitrium patens
Pp3c24_3750 5.0kb upstream 5.0kb upstream 5000 false Chr24: 2858397-2863396 Physcomitrium patens
Pp3c24_3750 5.0kb downstream 5.0kb downstream 8422 true Chr24: 2863397-2871818 Physcomitrium patens
Pp3c24_3750 5.0kb downstream 5.0kb downstream 5000 false Chr24: 2866819-2871818 Physcomitrium patens
Pp3c24_3750 10.0kb upstream 10.0kb upstream 13422 true Chr24: 2853397-2866818 Physcomitrium patens
Pp3c24_3750 10.0kb upstream 10.0kb upstream 10000 false Chr24: 2853397-2863396 Physcomitrium patens
Pp3c24_3750 10.0kb downstream 10.0kb downstream 13422 true Chr24: 2863397-2876818 Physcomitrium patens
Pp3c24_3750 10.0kb downstream 10.0kb downstream 10000 false Chr24: 2866819-2876818 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348423 5274 Embryophyte View MSA
123427465 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 42.951     High  
cufflinks 35.591     High  
cufflinks 38.418     High  
cufflinks 22.397     High  
cufflinks 3.475       Low
cufflinks 20.896        
cufflinks 22.892     High  
cufflinks 13.894        
cufflinks 29.752     High  
cufflinks 26.533     High  
cufflinks 31.02     High  
cufflinks 3.215       Low
cufflinks 29.268     High  
cufflinks 31.6     High  
cufflinks 39.308     High  
cufflinks 19.903     High  
cufflinks 24.734     High  
cufflinks 25.793     High  
cufflinks 26.351     High  
cufflinks 25.971     High  
cufflinks 25.028     High  
cufflinks 16.511        
cufflinks 24.455     High  
cufflinks 8.016       Low
cufflinks 4.538       Low
cufflinks 43.664     High High
cufflinks 28.164     High  
cufflinks 29.137     High  
cufflinks 39.533     High  
cufflinks 34.273     High  

0 Strain