Gene : Pp3c24_14160 P. patens v3.3
Defline:  (1 of 2) PTHR31412:SF2 - ZINC METALLOPEPTIDASE EGY3, CHLOROPLASTIC-RELATED Genomic Order:  643
Name:  ? Pp3c24_14160 Secondary Identifier:  ? PAC:32910532
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c24_14160 0.5kb upstream 0.5kb upstream 5118 true Chr24: 9403807-9408924 Physcomitrium patens
Pp3c24_14160 0.5kb upstream 0.5kb upstream 500 false Chr24: 9403807-9404306 Physcomitrium patens
Pp3c24_14160 0.5kb downstream 0.5kb downstream 5118 true Chr24: 9404307-9409424 Physcomitrium patens
Pp3c24_14160 0.5kb downstream 0.5kb downstream 500 false Chr24: 9408925-9409424 Physcomitrium patens
Pp3c24_14160 1.0kb upstream 1.0kb upstream 5618 true Chr24: 9403307-9408924 Physcomitrium patens
Pp3c24_14160 1.0kb upstream 1.0kb upstream 1000 false Chr24: 9403307-9404306 Physcomitrium patens
Pp3c24_14160 1.0kb downstream 1.0kb downstream 5618 true Chr24: 9404307-9409924 Physcomitrium patens
Pp3c24_14160 1.0kb downstream 1.0kb downstream 1000 false Chr24: 9408925-9409924 Physcomitrium patens
Pp3c24_14160 2.0kb upstream 2.0kb upstream 6618 true Chr24: 9402307-9408924 Physcomitrium patens
Pp3c24_14160 2.0kb upstream 2.0kb upstream 2000 false Chr24: 9402307-9404306 Physcomitrium patens
Pp3c24_14160 2.0kb downstream 2.0kb downstream 6618 true Chr24: 9404307-9410924 Physcomitrium patens
Pp3c24_14160 2.0kb downstream 2.0kb downstream 2000 false Chr24: 9408925-9410924 Physcomitrium patens
Pp3c24_14160 5.0kb upstream 5.0kb upstream 9618 true Chr24: 9399307-9408924 Physcomitrium patens
Pp3c24_14160 5.0kb upstream 5.0kb upstream 5000 false Chr24: 9399307-9404306 Physcomitrium patens
Pp3c24_14160 5.0kb downstream 5.0kb downstream 9618 true Chr24: 9404307-9413924 Physcomitrium patens
Pp3c24_14160 5.0kb downstream 5.0kb downstream 5000 false Chr24: 9408925-9413924 Physcomitrium patens
Pp3c24_14160 10.0kb upstream 10.0kb upstream 14618 true Chr24: 9394307-9408924 Physcomitrium patens
Pp3c24_14160 10.0kb upstream 10.0kb upstream 10000 false Chr24: 9394307-9404306 Physcomitrium patens
Pp3c24_14160 10.0kb downstream 10.0kb downstream 14618 true Chr24: 9404307-9418924 Physcomitrium patens
Pp3c24_14160 10.0kb downstream 10.0kb downstream 10000 false Chr24: 9408925-9418924 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347143 5274 Embryophyte View MSA
123425233 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.571        
cufflinks 5.82        
cufflinks 12.216        
cufflinks 5.505        
cufflinks 8.551        
cufflinks 7.959        
cufflinks 48.15     High High
cufflinks 4.636        
cufflinks 3.851       Low
cufflinks 10.066        
cufflinks 11.643        
cufflinks 6.469        
cufflinks 5.964        
cufflinks 11.607        
cufflinks 33.445     High High
cufflinks 12.832        
cufflinks 4.657        
cufflinks 7.775        
cufflinks 6.572        
cufflinks 10.416        
cufflinks 4.629        
cufflinks 21.803     High High
cufflinks 8.114        
cufflinks 43.319     High High
cufflinks 10.368        
cufflinks 40.239     High High
cufflinks 3.253       Low
cufflinks 12.692        
cufflinks 2.359       Low
cufflinks 12.121        

0 Strain