Gene : Pp3c24_18540 P. patens v3.3
Defline:  (1 of 2) PTHR22912:SF180 - 3-PHENYLPROPIONATE/CINNAMIC ACID DIOXYGENASE FERREDOXIN--NAD(+) REDUCTASE COMPONENT Genomic Order:  826
Name:  ? Pp3c24_18540 Secondary Identifier:  ? PAC:32909684
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-7279 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c24_18540 0.5kb upstream 0.5kb upstream 6613 true Chr24: 12438147-12444759 Physcomitrium patens
Pp3c24_18540 0.5kb upstream 0.5kb upstream 500 false Chr24: 12444260-12444759 Physcomitrium patens
Pp3c24_18540 0.5kb downstream 0.5kb downstream 6613 true Chr24: 12437647-12444259 Physcomitrium patens
Pp3c24_18540 0.5kb downstream 0.5kb downstream 500 false Chr24: 12437647-12438146 Physcomitrium patens
Pp3c24_18540 1.0kb upstream 1.0kb upstream 7113 true Chr24: 12438147-12445259 Physcomitrium patens
Pp3c24_18540 1.0kb upstream 1.0kb upstream 1000 false Chr24: 12444260-12445259 Physcomitrium patens
Pp3c24_18540 1.0kb downstream 1.0kb downstream 7113 true Chr24: 12437147-12444259 Physcomitrium patens
Pp3c24_18540 1.0kb downstream 1.0kb downstream 1000 false Chr24: 12437147-12438146 Physcomitrium patens
Pp3c24_18540 2.0kb upstream 2.0kb upstream 8113 true Chr24: 12438147-12446259 Physcomitrium patens
Pp3c24_18540 2.0kb upstream 2.0kb upstream 2000 false Chr24: 12444260-12446259 Physcomitrium patens
Pp3c24_18540 2.0kb downstream 2.0kb downstream 8113 true Chr24: 12436147-12444259 Physcomitrium patens
Pp3c24_18540 2.0kb downstream 2.0kb downstream 2000 false Chr24: 12436147-12438146 Physcomitrium patens
Pp3c24_18540 5.0kb upstream 5.0kb upstream 11113 true Chr24: 12438147-12449259 Physcomitrium patens
Pp3c24_18540 5.0kb upstream 5.0kb upstream 5000 false Chr24: 12444260-12449259 Physcomitrium patens
Pp3c24_18540 5.0kb downstream 5.0kb downstream 11113 true Chr24: 12433147-12444259 Physcomitrium patens
Pp3c24_18540 5.0kb downstream 5.0kb downstream 5000 false Chr24: 12433147-12438146 Physcomitrium patens
Pp3c24_18540 10.0kb upstream 10.0kb upstream 16113 true Chr24: 12438147-12454259 Physcomitrium patens
Pp3c24_18540 10.0kb upstream 10.0kb upstream 10000 false Chr24: 12444260-12454259 Physcomitrium patens
Pp3c24_18540 10.0kb downstream 10.0kb downstream 16113 true Chr24: 12428147-12444259 Physcomitrium patens
Pp3c24_18540 10.0kb downstream 10.0kb downstream 10000 false Chr24: 12428147-12438146 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344748 5274 Embryophyte View MSA
123426339 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.259        
cufflinks 20.212     High High
cufflinks 5.969       Low
cufflinks 12.231        
cufflinks 10.517        
cufflinks 7.041        
cufflinks 20.677     High High
cufflinks 18.015       High
cufflinks 13.268        
cufflinks 17.206       High
cufflinks 13.171        
cufflinks 12.238        
cufflinks 13.027        
cufflinks 6.448       Low
cufflinks 6.99        
cufflinks 11.69        
cufflinks 6.842        
cufflinks 11.794        
cufflinks 14.935        
cufflinks 7.232        
cufflinks 18.014       High
cufflinks 13.176     High  
cufflinks 6.052       Low
cufflinks 6.545       Low
cufflinks 12.972        
cufflinks 11.785        
cufflinks 11.676        
cufflinks 3.724       Low
cufflinks 9.637        
cufflinks 4.111       Low

0 Strain