Gene : Pp3c24_18900 P. patens v3.3
Defline:  (1 of 2) PTHR32285:SF5 - PROTEIN TRICHOME BIREFRINGENCE-LIKE 16 Genomic Order:  845
Name:  ? Pp3c24_18900 Secondary Identifier:  ? PAC:32911045
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Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c24_18900 0.5kb upstream 0.5kb upstream 4390 true Chr24: 12711032-12715421 Physcomitrium patens
Pp3c24_18900 0.5kb upstream 0.5kb upstream 500 false Chr24: 12714922-12715421 Physcomitrium patens
Pp3c24_18900 0.5kb downstream 0.5kb downstream 4390 true Chr24: 12710532-12714921 Physcomitrium patens
Pp3c24_18900 0.5kb downstream 0.5kb downstream 500 false Chr24: 12710532-12711031 Physcomitrium patens
Pp3c24_18900 1.0kb upstream 1.0kb upstream 4890 true Chr24: 12711032-12715921 Physcomitrium patens
Pp3c24_18900 1.0kb upstream 1.0kb upstream 1000 false Chr24: 12714922-12715921 Physcomitrium patens
Pp3c24_18900 1.0kb downstream 1.0kb downstream 4890 true Chr24: 12710032-12714921 Physcomitrium patens
Pp3c24_18900 1.0kb downstream 1.0kb downstream 1000 false Chr24: 12710032-12711031 Physcomitrium patens
Pp3c24_18900 2.0kb upstream 2.0kb upstream 5890 true Chr24: 12711032-12716921 Physcomitrium patens
Pp3c24_18900 2.0kb upstream 2.0kb upstream 2000 false Chr24: 12714922-12716921 Physcomitrium patens
Pp3c24_18900 2.0kb downstream 2.0kb downstream 5890 true Chr24: 12709032-12714921 Physcomitrium patens
Pp3c24_18900 2.0kb downstream 2.0kb downstream 2000 false Chr24: 12709032-12711031 Physcomitrium patens
Pp3c24_18900 5.0kb upstream 5.0kb upstream 8890 true Chr24: 12711032-12719921 Physcomitrium patens
Pp3c24_18900 5.0kb upstream 5.0kb upstream 5000 false Chr24: 12714922-12719921 Physcomitrium patens
Pp3c24_18900 5.0kb downstream 5.0kb downstream 8890 true Chr24: 12706032-12714921 Physcomitrium patens
Pp3c24_18900 5.0kb downstream 5.0kb downstream 5000 false Chr24: 12706032-12711031 Physcomitrium patens
Pp3c24_18900 10.0kb upstream 10.0kb upstream 13890 true Chr24: 12711032-12724921 Physcomitrium patens
Pp3c24_18900 10.0kb upstream 10.0kb upstream 10000 false Chr24: 12714922-12724921 Physcomitrium patens
Pp3c24_18900 10.0kb downstream 10.0kb downstream 13890 true Chr24: 12701032-12714921 Physcomitrium patens
Pp3c24_18900 10.0kb downstream 10.0kb downstream 10000 false Chr24: 12701032-12711031 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123428901 5275 Viridiplantae View MSA
121351071 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.618     High  
cufflinks 20.598        
cufflinks 23.638     High  
cufflinks 19.346        
cufflinks 23.342     High  
cufflinks 28.853     High High
cufflinks 17.913        
cufflinks 5.36       Low
cufflinks 25.043     High  
cufflinks 6.193       Low
cufflinks 27.209     High High
cufflinks 15.967        
cufflinks 18.888        
cufflinks 12.008        
cufflinks 18.4        
cufflinks 19.194        
cufflinks 17.204        
cufflinks 47.288     High High
cufflinks 12.066        
cufflinks 11.798        
cufflinks 8.485       Low
cufflinks 18.163        
cufflinks 19.139        
cufflinks 17.851        
cufflinks 15.435        
cufflinks 41.585     High High
cufflinks 14.342        
cufflinks 16.49        
cufflinks 11.443        
cufflinks 7.987       Low

0 Strain