Gene : Pp3c25_5440 P. patens v3.3
Defline:  (1 of 2) 2.1.1.189//2.1.1.190 - 23S rRNA (uracil(1939)-C(5))-methyltransferase / RNA uridine methyltransferase A Genomic Order:  258
Name:  ? Pp3c25_5440 Secondary Identifier:  ? PAC:32980125
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

11 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c25_5440 0.5kb upstream 0.5kb upstream 6247 true Chr25: 3525975-3532221 Physcomitrium patens
Pp3c25_5440 0.5kb upstream 0.5kb upstream 500 false Chr25: 3531722-3532221 Physcomitrium patens
Pp3c25_5440 0.5kb downstream 0.5kb downstream 6247 true Chr25: 3525475-3531721 Physcomitrium patens
Pp3c25_5440 0.5kb downstream 0.5kb downstream 500 false Chr25: 3525475-3525974 Physcomitrium patens
Pp3c25_5440 1.0kb upstream 1.0kb upstream 6747 true Chr25: 3525975-3532721 Physcomitrium patens
Pp3c25_5440 1.0kb upstream 1.0kb upstream 1000 false Chr25: 3531722-3532721 Physcomitrium patens
Pp3c25_5440 1.0kb downstream 1.0kb downstream 6747 true Chr25: 3524975-3531721 Physcomitrium patens
Pp3c25_5440 1.0kb downstream 1.0kb downstream 1000 false Chr25: 3524975-3525974 Physcomitrium patens
Pp3c25_5440 2.0kb upstream 2.0kb upstream 7747 true Chr25: 3525975-3533721 Physcomitrium patens
Pp3c25_5440 2.0kb upstream 2.0kb upstream 2000 false Chr25: 3531722-3533721 Physcomitrium patens
Pp3c25_5440 2.0kb downstream 2.0kb downstream 7747 true Chr25: 3523975-3531721 Physcomitrium patens
Pp3c25_5440 2.0kb downstream 2.0kb downstream 2000 false Chr25: 3523975-3525974 Physcomitrium patens
Pp3c25_5440 5.0kb upstream 5.0kb upstream 10747 true Chr25: 3525975-3536721 Physcomitrium patens
Pp3c25_5440 5.0kb upstream 5.0kb upstream 5000 false Chr25: 3531722-3536721 Physcomitrium patens
Pp3c25_5440 5.0kb downstream 5.0kb downstream 10747 true Chr25: 3520975-3531721 Physcomitrium patens
Pp3c25_5440 5.0kb downstream 5.0kb downstream 5000 false Chr25: 3520975-3525974 Physcomitrium patens
Pp3c25_5440 10.0kb upstream 10.0kb upstream 15747 true Chr25: 3525975-3541721 Physcomitrium patens
Pp3c25_5440 10.0kb upstream 10.0kb upstream 10000 false Chr25: 3531722-3541721 Physcomitrium patens
Pp3c25_5440 10.0kb downstream 10.0kb downstream 15747 true Chr25: 3515975-3531721 Physcomitrium patens
Pp3c25_5440 10.0kb downstream 10.0kb downstream 10000 false Chr25: 3515975-3525974 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121345091 5274 Embryophyte View MSA
123424748 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.374     High  
cufflinks 18.408       Low
cufflinks 39.114     High  
cufflinks 60.2     High High
cufflinks 35.651     High  
cufflinks 74.567     High High
cufflinks 25.968     High  
cufflinks 45.366     High  
cufflinks 33.344     High  
cufflinks 14.869     High Low
cufflinks 23.483     High  
cufflinks 40.863     High  
cufflinks 19.803     High  
cufflinks 14.606       Low
cufflinks 36.995     High  
cufflinks 47.994     High  
cufflinks 61.187     High High
cufflinks 26.996     High  
cufflinks 41.782     High  
cufflinks 50.839     High  
cufflinks 15.775       Low
cufflinks 48.291     High  
cufflinks 12.984     High Low
cufflinks 25.793     High  
cufflinks 80.548     High High
cufflinks 48.652     High  
cufflinks 27.346     High  
cufflinks 12.125       Low
cufflinks 28.681     High  
cufflinks 31.21     High  

0 Strain