Gene : Pp3c25_5840 P. patens v3.3
Defline:  (1 of 1) PTHR21499:SF1 - HOMOSERINE DEHYDROGENASE Genomic Order:  279
Name:  ? Pp3c25_5840 Secondary Identifier:  ? PAC:32979120
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens HOMOSERSYN-PWY Physcomitrium patens pathologic  
Ppatens PWY-3001 Physcomitrium patens pathologic  
Ppatens PWY-5097 Physcomitrium patens pathologic  
Ppatens PWY-724 Physcomitrium patens pathologic  
Ppatens THRESYN-PWY Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c25_5840 0.5kb upstream 0.5kb upstream 4342 true Chr25: 3825431-3829772 Physcomitrium patens
Pp3c25_5840 0.5kb upstream 0.5kb upstream 500 false Chr25: 3829273-3829772 Physcomitrium patens
Pp3c25_5840 0.5kb downstream 0.5kb downstream 4342 true Chr25: 3824931-3829272 Physcomitrium patens
Pp3c25_5840 0.5kb downstream 0.5kb downstream 500 false Chr25: 3824931-3825430 Physcomitrium patens
Pp3c25_5840 1.0kb upstream 1.0kb upstream 4842 true Chr25: 3825431-3830272 Physcomitrium patens
Pp3c25_5840 1.0kb upstream 1.0kb upstream 1000 false Chr25: 3829273-3830272 Physcomitrium patens
Pp3c25_5840 1.0kb downstream 1.0kb downstream 4842 true Chr25: 3824431-3829272 Physcomitrium patens
Pp3c25_5840 1.0kb downstream 1.0kb downstream 1000 false Chr25: 3824431-3825430 Physcomitrium patens
Pp3c25_5840 2.0kb upstream 2.0kb upstream 5842 true Chr25: 3825431-3831272 Physcomitrium patens
Pp3c25_5840 2.0kb upstream 2.0kb upstream 2000 false Chr25: 3829273-3831272 Physcomitrium patens
Pp3c25_5840 2.0kb downstream 2.0kb downstream 5842 true Chr25: 3823431-3829272 Physcomitrium patens
Pp3c25_5840 2.0kb downstream 2.0kb downstream 2000 false Chr25: 3823431-3825430 Physcomitrium patens
Pp3c25_5840 5.0kb upstream 5.0kb upstream 8842 true Chr25: 3825431-3834272 Physcomitrium patens
Pp3c25_5840 5.0kb upstream 5.0kb upstream 5000 false Chr25: 3829273-3834272 Physcomitrium patens
Pp3c25_5840 5.0kb downstream 5.0kb downstream 8842 true Chr25: 3820431-3829272 Physcomitrium patens
Pp3c25_5840 5.0kb downstream 5.0kb downstream 5000 false Chr25: 3820431-3825430 Physcomitrium patens
Pp3c25_5840 10.0kb upstream 10.0kb upstream 13842 true Chr25: 3825431-3839272 Physcomitrium patens
Pp3c25_5840 10.0kb upstream 10.0kb upstream 10000 false Chr25: 3829273-3839272 Physcomitrium patens
Pp3c25_5840 10.0kb downstream 10.0kb downstream 13842 true Chr25: 3815431-3829272 Physcomitrium patens
Pp3c25_5840 10.0kb downstream 10.0kb downstream 10000 false Chr25: 3815431-3825430 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121349256 5274 Embryophyte View MSA
123424216 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.647        
cufflinks 1.411        
cufflinks 1.179        
cufflinks 1.189        
cufflinks 1.715        
cufflinks 1.623        
cufflinks 2.08        
cufflinks 1.676        
cufflinks 0.296       Low
cufflinks 1.686        
cufflinks 1.318        
cufflinks 1.488        
cufflinks 1.177        
cufflinks 1.631        
cufflinks 2.046        
cufflinks 1.582        
cufflinks 1.215        
cufflinks 0.909        
cufflinks 1.555        
cufflinks 1.807        
cufflinks 2.115        
cufflinks 2.272       High
cufflinks 1.187        
cufflinks 0.314       Low
cufflinks 0.692       Low
cufflinks 1.507        
cufflinks 2.007        
cufflinks 1.772        
cufflinks 0.649       Low
cufflinks 1.245        

0 Strain