Gene : Pp3c25_1640 P. patens v3.3
Defline:  (1 of 1) PTHR20978:SF0 - SPLICING FACTOR 3B SUBUNIT 5 Genomic Order:  90
Name:  ? Pp3c25_1640 Secondary Identifier:  ? PAC:32979488
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c25_1640 0.5kb upstream 0.5kb upstream 2538 true Chr25: 1069693-1072230 Physcomitrium patens
Pp3c25_1640 0.5kb upstream 0.5kb upstream 500 false Chr25: 1069693-1070192 Physcomitrium patens
Pp3c25_1640 0.5kb downstream 0.5kb downstream 2538 true Chr25: 1070193-1072730 Physcomitrium patens
Pp3c25_1640 0.5kb downstream 0.5kb downstream 500 false Chr25: 1072231-1072730 Physcomitrium patens
Pp3c25_1640 1.0kb upstream 1.0kb upstream 3038 true Chr25: 1069193-1072230 Physcomitrium patens
Pp3c25_1640 1.0kb upstream 1.0kb upstream 1000 false Chr25: 1069193-1070192 Physcomitrium patens
Pp3c25_1640 1.0kb downstream 1.0kb downstream 3038 true Chr25: 1070193-1073230 Physcomitrium patens
Pp3c25_1640 1.0kb downstream 1.0kb downstream 1000 false Chr25: 1072231-1073230 Physcomitrium patens
Pp3c25_1640 2.0kb upstream 2.0kb upstream 4038 true Chr25: 1068193-1072230 Physcomitrium patens
Pp3c25_1640 2.0kb upstream 2.0kb upstream 2000 false Chr25: 1068193-1070192 Physcomitrium patens
Pp3c25_1640 2.0kb downstream 2.0kb downstream 4038 true Chr25: 1070193-1074230 Physcomitrium patens
Pp3c25_1640 2.0kb downstream 2.0kb downstream 2000 false Chr25: 1072231-1074230 Physcomitrium patens
Pp3c25_1640 5.0kb upstream 5.0kb upstream 7038 true Chr25: 1065193-1072230 Physcomitrium patens
Pp3c25_1640 5.0kb upstream 5.0kb upstream 5000 false Chr25: 1065193-1070192 Physcomitrium patens
Pp3c25_1640 5.0kb downstream 5.0kb downstream 7038 true Chr25: 1070193-1077230 Physcomitrium patens
Pp3c25_1640 5.0kb downstream 5.0kb downstream 5000 false Chr25: 1072231-1077230 Physcomitrium patens
Pp3c25_1640 10.0kb upstream 10.0kb upstream 12038 true Chr25: 1060193-1072230 Physcomitrium patens
Pp3c25_1640 10.0kb upstream 10.0kb upstream 10000 false Chr25: 1060193-1070192 Physcomitrium patens
Pp3c25_1640 10.0kb downstream 10.0kb downstream 12038 true Chr25: 1070193-1082230 Physcomitrium patens
Pp3c25_1640 10.0kb downstream 10.0kb downstream 10000 false Chr25: 1072231-1082230 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123428927 5275 Viridiplantae View MSA
121347588 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.216        
cufflinks 2.938        
cufflinks 2.93        
cufflinks 3.059        
cufflinks 5.575       High
cufflinks 6.646       High
cufflinks 3.585        
cufflinks 5.445       High
cufflinks 3.883        
cufflinks 3.682        
cufflinks 2.442       Low
cufflinks 3.163        
cufflinks 4.471        
cufflinks 3.746        
cufflinks 3.578        
cufflinks 4.454        
cufflinks 2.991        
cufflinks 3.848        
cufflinks 4.331        
cufflinks 2.308       Low
cufflinks 4.285        
cufflinks 3.381        
cufflinks 4.271        
cufflinks 3.127        
cufflinks 3.655        
cufflinks 3.687        
cufflinks 2.788       Low
cufflinks 5.721       High
cufflinks 5.842       High
cufflinks 2.384       Low

0 Strain