Gene : Pp3c25_9310 P. patens v3.3
Defline:  (1 of 1) PTHR13847:SF191 - L-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL Genomic Order:  421
Name:  ? Pp3c25_9310 Secondary Identifier:  ? PAC:32979577
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c25_9310 0.5kb upstream 0.5kb upstream 4709 true Chr25: 6473441-6478149 Physcomitrium patens
Pp3c25_9310 0.5kb upstream 0.5kb upstream 500 false Chr25: 6473441-6473940 Physcomitrium patens
Pp3c25_9310 0.5kb downstream 0.5kb downstream 4709 true Chr25: 6473941-6478649 Physcomitrium patens
Pp3c25_9310 0.5kb downstream 0.5kb downstream 500 false Chr25: 6478150-6478649 Physcomitrium patens
Pp3c25_9310 1.0kb upstream 1.0kb upstream 5209 true Chr25: 6472941-6478149 Physcomitrium patens
Pp3c25_9310 1.0kb upstream 1.0kb upstream 1000 false Chr25: 6472941-6473940 Physcomitrium patens
Pp3c25_9310 1.0kb downstream 1.0kb downstream 5209 true Chr25: 6473941-6479149 Physcomitrium patens
Pp3c25_9310 1.0kb downstream 1.0kb downstream 1000 false Chr25: 6478150-6479149 Physcomitrium patens
Pp3c25_9310 2.0kb upstream 2.0kb upstream 6209 true Chr25: 6471941-6478149 Physcomitrium patens
Pp3c25_9310 2.0kb upstream 2.0kb upstream 2000 false Chr25: 6471941-6473940 Physcomitrium patens
Pp3c25_9310 2.0kb downstream 2.0kb downstream 6209 true Chr25: 6473941-6480149 Physcomitrium patens
Pp3c25_9310 2.0kb downstream 2.0kb downstream 2000 false Chr25: 6478150-6480149 Physcomitrium patens
Pp3c25_9310 5.0kb upstream 5.0kb upstream 9209 true Chr25: 6468941-6478149 Physcomitrium patens
Pp3c25_9310 5.0kb upstream 5.0kb upstream 5000 false Chr25: 6468941-6473940 Physcomitrium patens
Pp3c25_9310 5.0kb downstream 5.0kb downstream 9209 true Chr25: 6473941-6483149 Physcomitrium patens
Pp3c25_9310 5.0kb downstream 5.0kb downstream 5000 false Chr25: 6478150-6483149 Physcomitrium patens
Pp3c25_9310 10.0kb upstream 10.0kb upstream 14209 true Chr25: 6463941-6478149 Physcomitrium patens
Pp3c25_9310 10.0kb upstream 10.0kb upstream 10000 false Chr25: 6463941-6473940 Physcomitrium patens
Pp3c25_9310 10.0kb downstream 10.0kb downstream 14209 true Chr25: 6473941-6488149 Physcomitrium patens
Pp3c25_9310 10.0kb downstream 10.0kb downstream 10000 false Chr25: 6478150-6488149 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342316 5274 Embryophyte View MSA
123427019 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.034        
cufflinks 1.719       Low
cufflinks 9.534        
cufflinks 3.249        
cufflinks 10.136        
cufflinks 6.571        
cufflinks 4.15        
cufflinks 11.564       High
cufflinks 6.874        
cufflinks 6.631        
cufflinks 8.657        
cufflinks 12.221       High
cufflinks 10.158        
cufflinks 16.355       High
cufflinks 3.15        
cufflinks 3.503        
cufflinks 2.987        
cufflinks 1.775       Low
cufflinks 2.101       Low
cufflinks 8.619        
cufflinks 1.972       Low
cufflinks 7.501        
cufflinks 8.536        
cufflinks 21.432     High High
cufflinks 9.116        
cufflinks 3.921        
cufflinks 7.377        
cufflinks 5.839        
cufflinks 3.667        
cufflinks 15.272       High

0 Strain