Gene : Pp3c25_9410 P. patens v3.3
Genomic Order:  428 Name:  ? Pp3c25_9410
Secondary Identifier:  ? PAC:32980043
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c25_9410 0.5kb upstream 0.5kb upstream 3715 true Chr25: 6539161-6542875 Physcomitrium patens
Pp3c25_9410 0.5kb upstream 0.5kb upstream 500 false Chr25: 6542376-6542875 Physcomitrium patens
Pp3c25_9410 0.5kb downstream 0.5kb downstream 3715 true Chr25: 6538661-6542375 Physcomitrium patens
Pp3c25_9410 0.5kb downstream 0.5kb downstream 500 false Chr25: 6538661-6539160 Physcomitrium patens
Pp3c25_9410 1.0kb upstream 1.0kb upstream 4215 true Chr25: 6539161-6543375 Physcomitrium patens
Pp3c25_9410 1.0kb upstream 1.0kb upstream 1000 false Chr25: 6542376-6543375 Physcomitrium patens
Pp3c25_9410 1.0kb downstream 1.0kb downstream 4215 true Chr25: 6538161-6542375 Physcomitrium patens
Pp3c25_9410 1.0kb downstream 1.0kb downstream 1000 false Chr25: 6538161-6539160 Physcomitrium patens
Pp3c25_9410 2.0kb upstream 2.0kb upstream 5215 true Chr25: 6539161-6544375 Physcomitrium patens
Pp3c25_9410 2.0kb upstream 2.0kb upstream 2000 false Chr25: 6542376-6544375 Physcomitrium patens
Pp3c25_9410 2.0kb downstream 2.0kb downstream 5215 true Chr25: 6537161-6542375 Physcomitrium patens
Pp3c25_9410 2.0kb downstream 2.0kb downstream 2000 false Chr25: 6537161-6539160 Physcomitrium patens
Pp3c25_9410 5.0kb upstream 5.0kb upstream 8215 true Chr25: 6539161-6547375 Physcomitrium patens
Pp3c25_9410 5.0kb upstream 5.0kb upstream 5000 false Chr25: 6542376-6547375 Physcomitrium patens
Pp3c25_9410 5.0kb downstream 5.0kb downstream 8215 true Chr25: 6534161-6542375 Physcomitrium patens
Pp3c25_9410 5.0kb downstream 5.0kb downstream 5000 false Chr25: 6534161-6539160 Physcomitrium patens
Pp3c25_9410 10.0kb upstream 10.0kb upstream 13215 true Chr25: 6539161-6552375 Physcomitrium patens
Pp3c25_9410 10.0kb upstream 10.0kb upstream 10000 false Chr25: 6542376-6552375 Physcomitrium patens
Pp3c25_9410 10.0kb downstream 10.0kb downstream 13215 true Chr25: 6529161-6542375 Physcomitrium patens
Pp3c25_9410 10.0kb downstream 10.0kb downstream 10000 false Chr25: 6529161-6539160 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121335366 5274 Embryophyte Singleton cluster - no MSA
123372223 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.473        
cufflinks 6.302        
cufflinks 6.093        
cufflinks 8.272        
cufflinks 1.614        
cufflinks 0.433       Low
cufflinks 2.936        
cufflinks 5.798        
cufflinks 16.01       High
cufflinks 1.764        
cufflinks 8.347        
cufflinks 12.006       High
cufflinks 0.13       Low
cufflinks 3.851        
cufflinks 0.914        
cufflinks 1.18        
cufflinks 1.068        
cufflinks 6.484        
cufflinks 2.499        
cufflinks 6.91        
cufflinks 3.531        
cufflinks 0.534       Low
cufflinks 5.891        
cufflinks 1.214        
cufflinks 8.981        
cufflinks 1.389        
cufflinks 9.682        
cufflinks 0.324       Low
cufflinks 9.404        
cufflinks 0.574       Low

0 Strain