Gene : Pp3c26_11100 P. patens v3.3
Defline:  (1 of 24) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  507
Name:  ? Pp3c26_11100 Secondary Identifier:  ? PAC:32917687
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c26_11100 0.5kb upstream 0.5kb upstream 4626 true Chr26: 6973951-6978576 Physcomitrium patens
Pp3c26_11100 0.5kb upstream 0.5kb upstream 500 false Chr26: 6973951-6974450 Physcomitrium patens
Pp3c26_11100 0.5kb downstream 0.5kb downstream 4626 true Chr26: 6974451-6979076 Physcomitrium patens
Pp3c26_11100 0.5kb downstream 0.5kb downstream 500 false Chr26: 6978577-6979076 Physcomitrium patens
Pp3c26_11100 1.0kb upstream 1.0kb upstream 5126 true Chr26: 6973451-6978576 Physcomitrium patens
Pp3c26_11100 1.0kb upstream 1.0kb upstream 1000 false Chr26: 6973451-6974450 Physcomitrium patens
Pp3c26_11100 1.0kb downstream 1.0kb downstream 5126 true Chr26: 6974451-6979576 Physcomitrium patens
Pp3c26_11100 1.0kb downstream 1.0kb downstream 1000 false Chr26: 6978577-6979576 Physcomitrium patens
Pp3c26_11100 2.0kb upstream 2.0kb upstream 6126 true Chr26: 6972451-6978576 Physcomitrium patens
Pp3c26_11100 2.0kb upstream 2.0kb upstream 2000 false Chr26: 6972451-6974450 Physcomitrium patens
Pp3c26_11100 2.0kb downstream 2.0kb downstream 6126 true Chr26: 6974451-6980576 Physcomitrium patens
Pp3c26_11100 2.0kb downstream 2.0kb downstream 2000 false Chr26: 6978577-6980576 Physcomitrium patens
Pp3c26_11100 5.0kb upstream 5.0kb upstream 9126 true Chr26: 6969451-6978576 Physcomitrium patens
Pp3c26_11100 5.0kb upstream 5.0kb upstream 5000 false Chr26: 6969451-6974450 Physcomitrium patens
Pp3c26_11100 5.0kb downstream 5.0kb downstream 9126 true Chr26: 6974451-6983576 Physcomitrium patens
Pp3c26_11100 5.0kb downstream 5.0kb downstream 5000 false Chr26: 6978577-6983576 Physcomitrium patens
Pp3c26_11100 10.0kb upstream 10.0kb upstream 14126 true Chr26: 6964451-6978576 Physcomitrium patens
Pp3c26_11100 10.0kb upstream 10.0kb upstream 10000 false Chr26: 6964451-6974450 Physcomitrium patens
Pp3c26_11100 10.0kb downstream 10.0kb downstream 14126 true Chr26: 6974451-6988576 Physcomitrium patens
Pp3c26_11100 10.0kb downstream 10.0kb downstream 10000 false Chr26: 6978577-6988576 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
123429046 5275 Viridiplantae View MSA
121346704 5274 Embryophyte View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.757        
cufflinks 1.074        
cufflinks 1.89        
cufflinks 1.067        
cufflinks 3.085       High
cufflinks 3.17       High
cufflinks 0.293       Low
cufflinks 1.056        
cufflinks 1.616        
cufflinks 1.834        
cufflinks 0.209       Low
cufflinks 1.562        
cufflinks 1.014        
cufflinks 0.775        
cufflinks 1.049        
cufflinks 3.151       High
cufflinks 1.242        
cufflinks 1.726        
cufflinks 3.454       High
cufflinks 1.47        
cufflinks 0.439       Low
cufflinks 2.454        
cufflinks 0.315       Low
cufflinks 1.041        
cufflinks 0.929        
cufflinks 1.704        
cufflinks 1.756        
cufflinks 1.849        
cufflinks 0.978        
cufflinks 0.243       Low

0 Strain