Gene : Pp3c26_11350 P. patens v3.3
Defline:  (1 of 2) PTHR10974:SF1 - PROTEIN Y41E3.1, ISOFORM A Genomic Order:  522
Name:  ? Pp3c26_11350 Secondary Identifier:  ? PAC:32918076
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c26_11350 0.5kb upstream 0.5kb upstream 3125 true Chr26: 7130151-7133275 Physcomitrium patens
Pp3c26_11350 0.5kb upstream 0.5kb upstream 500 false Chr26: 7132776-7133275 Physcomitrium patens
Pp3c26_11350 0.5kb downstream 0.5kb downstream 3125 true Chr26: 7129651-7132775 Physcomitrium patens
Pp3c26_11350 0.5kb downstream 0.5kb downstream 500 false Chr26: 7129651-7130150 Physcomitrium patens
Pp3c26_11350 1.0kb upstream 1.0kb upstream 3625 true Chr26: 7130151-7133775 Physcomitrium patens
Pp3c26_11350 1.0kb upstream 1.0kb upstream 1000 false Chr26: 7132776-7133775 Physcomitrium patens
Pp3c26_11350 1.0kb downstream 1.0kb downstream 3625 true Chr26: 7129151-7132775 Physcomitrium patens
Pp3c26_11350 1.0kb downstream 1.0kb downstream 1000 false Chr26: 7129151-7130150 Physcomitrium patens
Pp3c26_11350 2.0kb upstream 2.0kb upstream 4625 true Chr26: 7130151-7134775 Physcomitrium patens
Pp3c26_11350 2.0kb upstream 2.0kb upstream 2000 false Chr26: 7132776-7134775 Physcomitrium patens
Pp3c26_11350 2.0kb downstream 2.0kb downstream 4625 true Chr26: 7128151-7132775 Physcomitrium patens
Pp3c26_11350 2.0kb downstream 2.0kb downstream 2000 false Chr26: 7128151-7130150 Physcomitrium patens
Pp3c26_11350 5.0kb upstream 5.0kb upstream 7625 true Chr26: 7130151-7137775 Physcomitrium patens
Pp3c26_11350 5.0kb upstream 5.0kb upstream 5000 false Chr26: 7132776-7137775 Physcomitrium patens
Pp3c26_11350 5.0kb downstream 5.0kb downstream 7625 true Chr26: 7125151-7132775 Physcomitrium patens
Pp3c26_11350 5.0kb downstream 5.0kb downstream 5000 false Chr26: 7125151-7130150 Physcomitrium patens
Pp3c26_11350 10.0kb upstream 10.0kb upstream 12625 true Chr26: 7130151-7142775 Physcomitrium patens
Pp3c26_11350 10.0kb upstream 10.0kb upstream 10000 false Chr26: 7132776-7142775 Physcomitrium patens
Pp3c26_11350 10.0kb downstream 10.0kb downstream 12625 true Chr26: 7120151-7132775 Physcomitrium patens
Pp3c26_11350 10.0kb downstream 10.0kb downstream 10000 false Chr26: 7120151-7130150 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121327375 5274 Embryophyte Singleton cluster - no MSA
123364404 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.003     Low  
cufflinks 0.004     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.001     Low Low
cufflinks 0.004     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low High
cufflinks 0.008     Low High
cufflinks 0.002     Low  
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low High
cufflinks 0.004     Low  
cufflinks 0.003     Low  
cufflinks 0.003     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.001     Low Low
cufflinks 0.003     Low  
cufflinks 0.004     Low  
cufflinks 0.002     Low  
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  

0 Strain