Gene : Pp3c27_1520 P. patens v3.3
Defline:  (1 of 4) 3.2.1.17 - Lysozyme / Muramidase Genomic Order:  55
Name:  ? Pp3c27_1520 Secondary Identifier:  ? PAC:32952041
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c27_1520 0.5kb upstream 0.5kb upstream 7511 true Chr27: 843458-850968 Physcomitrium patens
Pp3c27_1520 0.5kb upstream 0.5kb upstream 500 false Chr27: 850469-850968 Physcomitrium patens
Pp3c27_1520 0.5kb downstream 0.5kb downstream 7511 true Chr27: 842958-850468 Physcomitrium patens
Pp3c27_1520 0.5kb downstream 0.5kb downstream 500 false Chr27: 842958-843457 Physcomitrium patens
Pp3c27_1520 1.0kb upstream 1.0kb upstream 8011 true Chr27: 843458-851468 Physcomitrium patens
Pp3c27_1520 1.0kb upstream 1.0kb upstream 1000 false Chr27: 850469-851468 Physcomitrium patens
Pp3c27_1520 1.0kb downstream 1.0kb downstream 8011 true Chr27: 842458-850468 Physcomitrium patens
Pp3c27_1520 1.0kb downstream 1.0kb downstream 1000 false Chr27: 842458-843457 Physcomitrium patens
Pp3c27_1520 2.0kb upstream 2.0kb upstream 9011 true Chr27: 843458-852468 Physcomitrium patens
Pp3c27_1520 2.0kb upstream 2.0kb upstream 2000 false Chr27: 850469-852468 Physcomitrium patens
Pp3c27_1520 2.0kb downstream 2.0kb downstream 9011 true Chr27: 841458-850468 Physcomitrium patens
Pp3c27_1520 2.0kb downstream 2.0kb downstream 2000 false Chr27: 841458-843457 Physcomitrium patens
Pp3c27_1520 5.0kb upstream 5.0kb upstream 12011 true Chr27: 843458-855468 Physcomitrium patens
Pp3c27_1520 5.0kb upstream 5.0kb upstream 5000 false Chr27: 850469-855468 Physcomitrium patens
Pp3c27_1520 5.0kb downstream 5.0kb downstream 12011 true Chr27: 838458-850468 Physcomitrium patens
Pp3c27_1520 5.0kb downstream 5.0kb downstream 5000 false Chr27: 838458-843457 Physcomitrium patens
Pp3c27_1520 10.0kb upstream 10.0kb upstream 17011 true Chr27: 843458-860468 Physcomitrium patens
Pp3c27_1520 10.0kb upstream 10.0kb upstream 10000 false Chr27: 850469-860468 Physcomitrium patens
Pp3c27_1520 10.0kb downstream 10.0kb downstream 17011 true Chr27: 833458-850468 Physcomitrium patens
Pp3c27_1520 10.0kb downstream 10.0kb downstream 10000 false Chr27: 833458-843457 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121342379 5274 Embryophyte View MSA
123378957 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.574        
cufflinks 1.183        
cufflinks 0.581        
cufflinks 1.526       High
cufflinks 1.518       High
cufflinks 0.939        
cufflinks 1.444       High
cufflinks 0.321       Low
cufflinks 0.57        
cufflinks 0.763        
cufflinks 1.263        
cufflinks 1.009        
cufflinks 1.252        
cufflinks 1.12        
cufflinks 0.796        
cufflinks 0.527       Low
cufflinks 0.284       Low
cufflinks 0.845        
cufflinks 1.183        
cufflinks 1.212        
cufflinks 0.427       Low
cufflinks 0.852        
cufflinks 0.332       Low
cufflinks 1.119        
cufflinks 1.293        
cufflinks 0.884        
cufflinks 0.898        
cufflinks 1.27        
cufflinks 1.129        
cufflinks 1.894       High

0 Strain