Gene : Pp3c27_2850 P. patens v3.3
Defline:  (1 of 1) PTHR35460:SF1 - TRANSLATION ELONGATION FACTOR EF-1 ALPHA Genomic Order:  139
Name:  ? Pp3c27_2850 Secondary Identifier:  ? PAC:32951979
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

9 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c27_2850 0.5kb upstream 0.5kb upstream 12056 true Chr27: 1588351-1600406 Physcomitrium patens
Pp3c27_2850 0.5kb upstream 0.5kb upstream 500 false Chr27: 1588351-1588850 Physcomitrium patens
Pp3c27_2850 0.5kb downstream 0.5kb downstream 12056 true Chr27: 1588851-1600906 Physcomitrium patens
Pp3c27_2850 0.5kb downstream 0.5kb downstream 500 false Chr27: 1600407-1600906 Physcomitrium patens
Pp3c27_2850 1.0kb upstream 1.0kb upstream 12556 true Chr27: 1587851-1600406 Physcomitrium patens
Pp3c27_2850 1.0kb upstream 1.0kb upstream 1000 false Chr27: 1587851-1588850 Physcomitrium patens
Pp3c27_2850 1.0kb downstream 1.0kb downstream 12556 true Chr27: 1588851-1601406 Physcomitrium patens
Pp3c27_2850 1.0kb downstream 1.0kb downstream 1000 false Chr27: 1600407-1601406 Physcomitrium patens
Pp3c27_2850 2.0kb upstream 2.0kb upstream 13556 true Chr27: 1586851-1600406 Physcomitrium patens
Pp3c27_2850 2.0kb upstream 2.0kb upstream 2000 false Chr27: 1586851-1588850 Physcomitrium patens
Pp3c27_2850 2.0kb downstream 2.0kb downstream 13556 true Chr27: 1588851-1602406 Physcomitrium patens
Pp3c27_2850 2.0kb downstream 2.0kb downstream 2000 false Chr27: 1600407-1602406 Physcomitrium patens
Pp3c27_2850 5.0kb upstream 5.0kb upstream 16556 true Chr27: 1583851-1600406 Physcomitrium patens
Pp3c27_2850 5.0kb upstream 5.0kb upstream 5000 false Chr27: 1583851-1588850 Physcomitrium patens
Pp3c27_2850 5.0kb downstream 5.0kb downstream 16556 true Chr27: 1588851-1605406 Physcomitrium patens
Pp3c27_2850 5.0kb downstream 5.0kb downstream 5000 false Chr27: 1600407-1605406 Physcomitrium patens
Pp3c27_2850 10.0kb upstream 10.0kb upstream 21556 true Chr27: 1578851-1600406 Physcomitrium patens
Pp3c27_2850 10.0kb upstream 10.0kb upstream 10000 false Chr27: 1578851-1588850 Physcomitrium patens
Pp3c27_2850 10.0kb downstream 10.0kb downstream 21556 true Chr27: 1588851-1610406 Physcomitrium patens
Pp3c27_2850 10.0kb downstream 10.0kb downstream 10000 false Chr27: 1600407-1610406 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121347287 5274 Embryophyte View MSA
123428083 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.574        
cufflinks 15.346        
cufflinks 19.323       High
cufflinks 8.686        
cufflinks 10.343        
cufflinks 16.315        
cufflinks 17.015        
cufflinks 6.126       Low
cufflinks 15.942        
cufflinks 29.66     High High
cufflinks 8.26        
cufflinks 5.888       Low
cufflinks 17.977        
cufflinks 13.978        
cufflinks 14.785        
cufflinks 16.882        
cufflinks 13.275        
cufflinks 7.291       Low
cufflinks 7.067       Low
cufflinks 13.137        
cufflinks 6.583       Low
cufflinks 24.681     High High
cufflinks 16.419        
cufflinks 21.554       High
cufflinks 8.134        
cufflinks 15.385        
cufflinks 17.751        
cufflinks 8.383        
cufflinks 7.364       Low
cufflinks 16.737        

0 Strain