Gene : Pp3c27_8610 P. patens v3.3
Defline:  (1 of 25) PF06985 - Heterokaryon incompatibility protein (HET) (HET) Genomic Order:  408
Name:  ? Pp3c27_8610 Secondary Identifier:  ? PAC:32951450
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c27_8610 0.5kb upstream 0.5kb upstream 4340 true Chr27: 5179886-5184225 Physcomitrium patens
Pp3c27_8610 0.5kb upstream 0.5kb upstream 500 false Chr27: 5179886-5180385 Physcomitrium patens
Pp3c27_8610 0.5kb downstream 0.5kb downstream 4340 true Chr27: 5180386-5184725 Physcomitrium patens
Pp3c27_8610 0.5kb downstream 0.5kb downstream 500 false Chr27: 5184226-5184725 Physcomitrium patens
Pp3c27_8610 1.0kb upstream 1.0kb upstream 4840 true Chr27: 5179386-5184225 Physcomitrium patens
Pp3c27_8610 1.0kb upstream 1.0kb upstream 1000 false Chr27: 5179386-5180385 Physcomitrium patens
Pp3c27_8610 1.0kb downstream 1.0kb downstream 4840 true Chr27: 5180386-5185225 Physcomitrium patens
Pp3c27_8610 1.0kb downstream 1.0kb downstream 1000 false Chr27: 5184226-5185225 Physcomitrium patens
Pp3c27_8610 2.0kb upstream 2.0kb upstream 5840 true Chr27: 5178386-5184225 Physcomitrium patens
Pp3c27_8610 2.0kb upstream 2.0kb upstream 2000 false Chr27: 5178386-5180385 Physcomitrium patens
Pp3c27_8610 2.0kb downstream 2.0kb downstream 5840 true Chr27: 5180386-5186225 Physcomitrium patens
Pp3c27_8610 2.0kb downstream 2.0kb downstream 2000 false Chr27: 5184226-5186225 Physcomitrium patens
Pp3c27_8610 5.0kb upstream 5.0kb upstream 8840 true Chr27: 5175386-5184225 Physcomitrium patens
Pp3c27_8610 5.0kb upstream 5.0kb upstream 5000 false Chr27: 5175386-5180385 Physcomitrium patens
Pp3c27_8610 5.0kb downstream 5.0kb downstream 8840 true Chr27: 5180386-5189225 Physcomitrium patens
Pp3c27_8610 5.0kb downstream 5.0kb downstream 5000 false Chr27: 5184226-5189225 Physcomitrium patens
Pp3c27_8610 10.0kb upstream 10.0kb upstream 13840 true Chr27: 5170386-5184225 Physcomitrium patens
Pp3c27_8610 10.0kb upstream 10.0kb upstream 10000 false Chr27: 5170386-5180385 Physcomitrium patens
Pp3c27_8610 10.0kb downstream 10.0kb downstream 13840 true Chr27: 5180386-5194225 Physcomitrium patens
Pp3c27_8610 10.0kb downstream 10.0kb downstream 10000 false Chr27: 5184226-5194225 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121337069 5274 Embryophyte View MSA
123373869 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.118        
cufflinks 4.426        
cufflinks 6.995        
cufflinks 6.446        
cufflinks 5.137        
cufflinks 3.765        
cufflinks 3.816        
cufflinks 0.784       Low
cufflinks 4.043        
cufflinks 3.977        
cufflinks 0.87       Low
cufflinks 4.776        
cufflinks 2.315       Low
cufflinks 3.052        
cufflinks 4.713        
cufflinks 6.457        
cufflinks 5.226        
cufflinks 6.028        
cufflinks 3.52        
cufflinks 7.538       High
cufflinks 5.324        
cufflinks 4.136        
cufflinks 6.521        
cufflinks 4.983        
cufflinks 8.314       High
cufflinks 5.722        
cufflinks 5.284        
cufflinks 6.785        
cufflinks 1.944       Low
cufflinks 3.661        

0 Strain