Gene : Pp3c27_4590 P. patens v3.3
Defline:  (1 of 4) PF00069//PF00092//PF02743 - Protein kinase domain (Pkinase) // von Willebrand factor type A domain (VWA) // Cache domain (Cache_1) Genomic Order:  226
Name:  ? Pp3c27_4590 Secondary Identifier:  ? PAC:32951898
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c27_4590 0.5kb upstream 0.5kb upstream 7375 true Chr27: 2648829-2656203 Physcomitrium patens
Pp3c27_4590 0.5kb upstream 0.5kb upstream 500 false Chr27: 2648829-2649328 Physcomitrium patens
Pp3c27_4590 0.5kb downstream 0.5kb downstream 7375 true Chr27: 2649329-2656703 Physcomitrium patens
Pp3c27_4590 0.5kb downstream 0.5kb downstream 500 false Chr27: 2656204-2656703 Physcomitrium patens
Pp3c27_4590 1.0kb upstream 1.0kb upstream 7875 true Chr27: 2648329-2656203 Physcomitrium patens
Pp3c27_4590 1.0kb upstream 1.0kb upstream 1000 false Chr27: 2648329-2649328 Physcomitrium patens
Pp3c27_4590 1.0kb downstream 1.0kb downstream 7875 true Chr27: 2649329-2657203 Physcomitrium patens
Pp3c27_4590 1.0kb downstream 1.0kb downstream 1000 false Chr27: 2656204-2657203 Physcomitrium patens
Pp3c27_4590 2.0kb upstream 2.0kb upstream 8875 true Chr27: 2647329-2656203 Physcomitrium patens
Pp3c27_4590 2.0kb upstream 2.0kb upstream 2000 false Chr27: 2647329-2649328 Physcomitrium patens
Pp3c27_4590 2.0kb downstream 2.0kb downstream 8875 true Chr27: 2649329-2658203 Physcomitrium patens
Pp3c27_4590 2.0kb downstream 2.0kb downstream 2000 false Chr27: 2656204-2658203 Physcomitrium patens
Pp3c27_4590 5.0kb upstream 5.0kb upstream 11875 true Chr27: 2644329-2656203 Physcomitrium patens
Pp3c27_4590 5.0kb upstream 5.0kb upstream 5000 false Chr27: 2644329-2649328 Physcomitrium patens
Pp3c27_4590 5.0kb downstream 5.0kb downstream 11875 true Chr27: 2649329-2661203 Physcomitrium patens
Pp3c27_4590 5.0kb downstream 5.0kb downstream 5000 false Chr27: 2656204-2661203 Physcomitrium patens
Pp3c27_4590 10.0kb upstream 10.0kb upstream 16875 true Chr27: 2639329-2656203 Physcomitrium patens
Pp3c27_4590 10.0kb upstream 10.0kb upstream 10000 false Chr27: 2639329-2649328 Physcomitrium patens
Pp3c27_4590 10.0kb downstream 10.0kb downstream 16875 true Chr27: 2649329-2666203 Physcomitrium patens
Pp3c27_4590 10.0kb downstream 10.0kb downstream 10000 false Chr27: 2656204-2666203 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121336535 5274 Embryophyte View MSA
123373358 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.702        
cufflinks 1.329        
cufflinks 1.216        
cufflinks 1.428        
cufflinks 1.171        
cufflinks 0.562        
cufflinks 1.701        
cufflinks 0.549        
cufflinks 2.111       High
cufflinks 2.029       High
cufflinks 4.038       High
cufflinks 0.91        
cufflinks 1.137        
cufflinks 0.815        
cufflinks 0.578        
cufflinks 2.363       High
cufflinks 0.41       Low
cufflinks 1.009        
cufflinks 0.551        
cufflinks 0.656        
cufflinks 0.996        
cufflinks 0.702        
cufflinks 1.603        
cufflinks 0.57        
cufflinks 0.205       Low
cufflinks 0.497       Low
cufflinks 1.494        
cufflinks 1.433        
cufflinks 0.365       Low
cufflinks 0.674        

0 Strain