Gene : Pp3c27_4260 P. patens v3.3
Defline:  (1 of 3) PTHR34548:SF2 - PROTEIN TIC 21, CHLOROPLASTIC Genomic Order:  213
Name:  ? Pp3c27_4260 Secondary Identifier:  ? PAC:32951976
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c27_4260 0.5kb upstream 0.5kb upstream 2509 true Chr27: 2378506-2381014 Physcomitrium patens
Pp3c27_4260 0.5kb upstream 0.5kb upstream 500 false Chr27: 2378506-2379005 Physcomitrium patens
Pp3c27_4260 0.5kb downstream 0.5kb downstream 2509 true Chr27: 2379006-2381514 Physcomitrium patens
Pp3c27_4260 0.5kb downstream 0.5kb downstream 500 false Chr27: 2381015-2381514 Physcomitrium patens
Pp3c27_4260 1.0kb upstream 1.0kb upstream 3009 true Chr27: 2378006-2381014 Physcomitrium patens
Pp3c27_4260 1.0kb upstream 1.0kb upstream 1000 false Chr27: 2378006-2379005 Physcomitrium patens
Pp3c27_4260 1.0kb downstream 1.0kb downstream 3009 true Chr27: 2379006-2382014 Physcomitrium patens
Pp3c27_4260 1.0kb downstream 1.0kb downstream 1000 false Chr27: 2381015-2382014 Physcomitrium patens
Pp3c27_4260 2.0kb upstream 2.0kb upstream 4009 true Chr27: 2377006-2381014 Physcomitrium patens
Pp3c27_4260 2.0kb upstream 2.0kb upstream 2000 false Chr27: 2377006-2379005 Physcomitrium patens
Pp3c27_4260 2.0kb downstream 2.0kb downstream 4009 true Chr27: 2379006-2383014 Physcomitrium patens
Pp3c27_4260 2.0kb downstream 2.0kb downstream 2000 false Chr27: 2381015-2383014 Physcomitrium patens
Pp3c27_4260 5.0kb upstream 5.0kb upstream 7009 true Chr27: 2374006-2381014 Physcomitrium patens
Pp3c27_4260 5.0kb upstream 5.0kb upstream 5000 false Chr27: 2374006-2379005 Physcomitrium patens
Pp3c27_4260 5.0kb downstream 5.0kb downstream 7009 true Chr27: 2379006-2386014 Physcomitrium patens
Pp3c27_4260 5.0kb downstream 5.0kb downstream 5000 false Chr27: 2381015-2386014 Physcomitrium patens
Pp3c27_4260 10.0kb upstream 10.0kb upstream 12009 true Chr27: 2369006-2381014 Physcomitrium patens
Pp3c27_4260 10.0kb upstream 10.0kb upstream 10000 false Chr27: 2369006-2379005 Physcomitrium patens
Pp3c27_4260 10.0kb downstream 10.0kb downstream 12009 true Chr27: 2379006-2391014 Physcomitrium patens
Pp3c27_4260 10.0kb downstream 10.0kb downstream 10000 false Chr27: 2381015-2391014 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348426 5274 Embryophyte View MSA
123424025 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.747        
cufflinks 0.474        
cufflinks 0.526        
cufflinks 1.792       High
cufflinks 0.612        
cufflinks 0.476        
cufflinks 0.822        
cufflinks 1.702       High
cufflinks 1.818       High
cufflinks 0.717        
cufflinks 0.371       Low
cufflinks 0.862        
cufflinks 0.459        
cufflinks 0.461        
cufflinks 0.659        
cufflinks 0.705        
cufflinks 0.479        
cufflinks 0.551        
cufflinks 1.957       High
cufflinks 0.39        
cufflinks 0.402        
cufflinks 0.429        
cufflinks 1.652       High
cufflinks 0.378       Low
cufflinks 0.409        
cufflinks 0.437        
cufflinks 0.319       Low
cufflinks 0.533        
cufflinks 1.111       High
cufflinks 0.544        

0 Strain