Gene : Pp3c27_3090 P. patens v3.3
Defline:  (1 of 1) PTHR31528:SF1 - PYRIMIDINE PRECURSOR BIOSYNTHESIS ENZYME THI11-RELATED Genomic Order:  153
Name:  ? Pp3c27_3090 Secondary Identifier:  ? PAC:32952153
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c27_3090 0.5kb upstream 0.5kb upstream 3020 true Chr27: 1737649-1740668 Physcomitrium patens
Pp3c27_3090 0.5kb upstream 0.5kb upstream 500 false Chr27: 1740169-1740668 Physcomitrium patens
Pp3c27_3090 0.5kb downstream 0.5kb downstream 3020 true Chr27: 1737149-1740168 Physcomitrium patens
Pp3c27_3090 0.5kb downstream 0.5kb downstream 500 false Chr27: 1737149-1737648 Physcomitrium patens
Pp3c27_3090 1.0kb upstream 1.0kb upstream 3520 true Chr27: 1737649-1741168 Physcomitrium patens
Pp3c27_3090 1.0kb upstream 1.0kb upstream 1000 false Chr27: 1740169-1741168 Physcomitrium patens
Pp3c27_3090 1.0kb downstream 1.0kb downstream 3520 true Chr27: 1736649-1740168 Physcomitrium patens
Pp3c27_3090 1.0kb downstream 1.0kb downstream 1000 false Chr27: 1736649-1737648 Physcomitrium patens
Pp3c27_3090 2.0kb upstream 2.0kb upstream 4520 true Chr27: 1737649-1742168 Physcomitrium patens
Pp3c27_3090 2.0kb upstream 2.0kb upstream 2000 false Chr27: 1740169-1742168 Physcomitrium patens
Pp3c27_3090 2.0kb downstream 2.0kb downstream 4520 true Chr27: 1735649-1740168 Physcomitrium patens
Pp3c27_3090 2.0kb downstream 2.0kb downstream 2000 false Chr27: 1735649-1737648 Physcomitrium patens
Pp3c27_3090 5.0kb upstream 5.0kb upstream 7520 true Chr27: 1737649-1745168 Physcomitrium patens
Pp3c27_3090 5.0kb upstream 5.0kb upstream 5000 false Chr27: 1740169-1745168 Physcomitrium patens
Pp3c27_3090 5.0kb downstream 5.0kb downstream 7520 true Chr27: 1732649-1740168 Physcomitrium patens
Pp3c27_3090 5.0kb downstream 5.0kb downstream 5000 false Chr27: 1732649-1737648 Physcomitrium patens
Pp3c27_3090 10.0kb upstream 10.0kb upstream 12520 true Chr27: 1737649-1750168 Physcomitrium patens
Pp3c27_3090 10.0kb upstream 10.0kb upstream 10000 false Chr27: 1740169-1750168 Physcomitrium patens
Pp3c27_3090 10.0kb downstream 10.0kb downstream 12520 true Chr27: 1727649-1740168 Physcomitrium patens
Pp3c27_3090 10.0kb downstream 10.0kb downstream 10000 false Chr27: 1727649-1737648 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343143 5274 Embryophyte View MSA
123427000 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.929        
cufflinks 1.052       Low
cufflinks 3.087        
cufflinks 1.96        
cufflinks 4.0        
cufflinks 1.368        
cufflinks 1.536        
cufflinks 1.21       Low
cufflinks 6.734       High
cufflinks 5.051       High
cufflinks 2.134        
cufflinks 3.21        
cufflinks 3.792        
cufflinks 3.422        
cufflinks 3.764        
cufflinks 2.279        
cufflinks 3.042        
cufflinks 1.311        
cufflinks 1.002       Low
cufflinks 7.319       High
cufflinks 2.4        
cufflinks 1.727        
cufflinks 1.778        
cufflinks 16.362       High
cufflinks 1.199       Low
cufflinks 1.441        
cufflinks 3.829        
cufflinks 1.738        
cufflinks 1.024       Low
cufflinks 4.664        

0 Strain