Gene : Pp3c27_8560 P. patens v3.3
Genomic Order:  405 Name:  ? Pp3c27_8560
Secondary Identifier:  ? PAC:32952078
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c27_8560 0.5kb upstream 0.5kb upstream 2951 true Chr27: 5169001-5171951 Physcomitrium patens
Pp3c27_8560 0.5kb upstream 0.5kb upstream 500 false Chr27: 5171452-5171951 Physcomitrium patens
Pp3c27_8560 0.5kb downstream 0.5kb downstream 2951 true Chr27: 5168501-5171451 Physcomitrium patens
Pp3c27_8560 0.5kb downstream 0.5kb downstream 500 false Chr27: 5168501-5169000 Physcomitrium patens
Pp3c27_8560 1.0kb upstream 1.0kb upstream 3451 true Chr27: 5169001-5172451 Physcomitrium patens
Pp3c27_8560 1.0kb upstream 1.0kb upstream 1000 false Chr27: 5171452-5172451 Physcomitrium patens
Pp3c27_8560 1.0kb downstream 1.0kb downstream 3451 true Chr27: 5168001-5171451 Physcomitrium patens
Pp3c27_8560 1.0kb downstream 1.0kb downstream 1000 false Chr27: 5168001-5169000 Physcomitrium patens
Pp3c27_8560 2.0kb upstream 2.0kb upstream 4451 true Chr27: 5169001-5173451 Physcomitrium patens
Pp3c27_8560 2.0kb upstream 2.0kb upstream 2000 false Chr27: 5171452-5173451 Physcomitrium patens
Pp3c27_8560 2.0kb downstream 2.0kb downstream 4451 true Chr27: 5167001-5171451 Physcomitrium patens
Pp3c27_8560 2.0kb downstream 2.0kb downstream 2000 false Chr27: 5167001-5169000 Physcomitrium patens
Pp3c27_8560 5.0kb upstream 5.0kb upstream 7451 true Chr27: 5169001-5176451 Physcomitrium patens
Pp3c27_8560 5.0kb upstream 5.0kb upstream 5000 false Chr27: 5171452-5176451 Physcomitrium patens
Pp3c27_8560 5.0kb downstream 5.0kb downstream 7451 true Chr27: 5164001-5171451 Physcomitrium patens
Pp3c27_8560 5.0kb downstream 5.0kb downstream 5000 false Chr27: 5164001-5169000 Physcomitrium patens
Pp3c27_8560 10.0kb upstream 10.0kb upstream 12451 true Chr27: 5169001-5181451 Physcomitrium patens
Pp3c27_8560 10.0kb upstream 10.0kb upstream 10000 false Chr27: 5171452-5181451 Physcomitrium patens
Pp3c27_8560 10.0kb downstream 10.0kb downstream 12451 true Chr27: 5159001-5171451 Physcomitrium patens
Pp3c27_8560 10.0kb downstream 10.0kb downstream 10000 false Chr27: 5159001-5169000 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343549 5274 Embryophyte View MSA
123379755 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.272        
cufflinks 0.247        
cufflinks 5.012       High
cufflinks 1.321       High
cufflinks 0.007     Low Low
cufflinks 0.048     Low  
cufflinks 3.548       High
cufflinks 0.173        
cufflinks 1.608       High
cufflinks 0.006     Low Low
cufflinks 0.051     Low  
cufflinks 0.368        
cufflinks 0.658        
cufflinks 0.046     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.045     Low  
cufflinks 0.013     Low Low
cufflinks 0.004     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.214        
cufflinks 0.172        
cufflinks 0.014     Low Low
cufflinks 0.5        
cufflinks 0.075     Low  
cufflinks 3.268       High
cufflinks 0.055     Low  
cufflinks 0.408        
cufflinks 0.021     Low  
cufflinks 0.059     Low  

0 Strain