Gene : Pp3s30_1110 P. patens v3.3
Defline:  (1 of 1) PF04865 - Baseplate J-like protein (Baseplate_J) Genomic Order:  114
Name:  ? Pp3s30_1110 Secondary Identifier:  ? PAC:32948546
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3s30_1110 0.5kb upstream 0.5kb upstream 9421 true scaffold_30: 263963-273383 Physcomitrium patens
Pp3s30_1110 0.5kb upstream 0.5kb upstream 500 false scaffold_30: 272884-273383 Physcomitrium patens
Pp3s30_1110 0.5kb downstream 0.5kb downstream 9421 true scaffold_30: 263463-272883 Physcomitrium patens
Pp3s30_1110 0.5kb downstream 0.5kb downstream 500 false scaffold_30: 263463-263962 Physcomitrium patens
Pp3s30_1110 1.0kb upstream 1.0kb upstream 9921 true scaffold_30: 263963-273883 Physcomitrium patens
Pp3s30_1110 1.0kb upstream 1.0kb upstream 1000 false scaffold_30: 272884-273883 Physcomitrium patens
Pp3s30_1110 1.0kb downstream 1.0kb downstream 9921 true scaffold_30: 262963-272883 Physcomitrium patens
Pp3s30_1110 1.0kb downstream 1.0kb downstream 1000 false scaffold_30: 262963-263962 Physcomitrium patens
Pp3s30_1110 2.0kb upstream 2.0kb upstream 10921 true scaffold_30: 263963-274883 Physcomitrium patens
Pp3s30_1110 2.0kb upstream 2.0kb upstream 2000 false scaffold_30: 272884-274883 Physcomitrium patens
Pp3s30_1110 2.0kb downstream 2.0kb downstream 10921 true scaffold_30: 261963-272883 Physcomitrium patens
Pp3s30_1110 2.0kb downstream 2.0kb downstream 2000 false scaffold_30: 261963-263962 Physcomitrium patens
Pp3s30_1110 5.0kb upstream 5.0kb upstream 13921 true scaffold_30: 263963-277883 Physcomitrium patens
Pp3s30_1110 5.0kb upstream 5.0kb upstream 5000 false scaffold_30: 272884-277883 Physcomitrium patens
Pp3s30_1110 5.0kb downstream 5.0kb downstream 13921 true scaffold_30: 258963-272883 Physcomitrium patens
Pp3s30_1110 5.0kb downstream 5.0kb downstream 5000 false scaffold_30: 258963-263962 Physcomitrium patens
Pp3s30_1110 10.0kb upstream 10.0kb upstream 18921 true scaffold_30: 263963-282883 Physcomitrium patens
Pp3s30_1110 10.0kb upstream 10.0kb upstream 10000 false scaffold_30: 272884-282883 Physcomitrium patens
Pp3s30_1110 10.0kb downstream 10.0kb downstream 18921 true scaffold_30: 253963-272883 Physcomitrium patens
Pp3s30_1110 10.0kb downstream 10.0kb downstream 10000 false scaffold_30: 253963-263962 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121331490 5274 Embryophyte Singleton cluster - no MSA
123368419 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain