Gene : Pp3s32_280 P. patens v3.3
Defline:  (1 of 1) 3.6.4.12//6.5.1.2 - DNA ligase (NAD(+)) / Polynucleotide ligase (NAD+) Genomic Order:  27
Name:  ? Pp3s32_280 Secondary Identifier:  ? PAC:32948403
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3s32_280 0.5kb upstream 0.5kb upstream 7983 true scaffold_32: 97764-105746 Physcomitrium patens
Pp3s32_280 0.5kb upstream 0.5kb upstream 500 false scaffold_32: 97764-98263 Physcomitrium patens
Pp3s32_280 0.5kb downstream 0.5kb downstream 7983 true scaffold_32: 98264-106246 Physcomitrium patens
Pp3s32_280 0.5kb downstream 0.5kb downstream 500 false scaffold_32: 105747-106246 Physcomitrium patens
Pp3s32_280 1.0kb upstream 1.0kb upstream 8483 true scaffold_32: 97264-105746 Physcomitrium patens
Pp3s32_280 1.0kb upstream 1.0kb upstream 1000 false scaffold_32: 97264-98263 Physcomitrium patens
Pp3s32_280 1.0kb downstream 1.0kb downstream 8483 true scaffold_32: 98264-106746 Physcomitrium patens
Pp3s32_280 1.0kb downstream 1.0kb downstream 1000 false scaffold_32: 105747-106746 Physcomitrium patens
Pp3s32_280 2.0kb upstream 2.0kb upstream 9483 true scaffold_32: 96264-105746 Physcomitrium patens
Pp3s32_280 2.0kb upstream 2.0kb upstream 2000 false scaffold_32: 96264-98263 Physcomitrium patens
Pp3s32_280 2.0kb downstream 2.0kb downstream 9483 true scaffold_32: 98264-107746 Physcomitrium patens
Pp3s32_280 2.0kb downstream 2.0kb downstream 2000 false scaffold_32: 105747-107746 Physcomitrium patens
Pp3s32_280 5.0kb upstream 5.0kb upstream 12483 true scaffold_32: 93264-105746 Physcomitrium patens
Pp3s32_280 5.0kb upstream 5.0kb upstream 5000 false scaffold_32: 93264-98263 Physcomitrium patens
Pp3s32_280 5.0kb downstream 5.0kb downstream 12483 true scaffold_32: 98264-110746 Physcomitrium patens
Pp3s32_280 5.0kb downstream 5.0kb downstream 5000 false scaffold_32: 105747-110746 Physcomitrium patens
Pp3s32_280 10.0kb upstream 10.0kb upstream 17483 true scaffold_32: 88264-105746 Physcomitrium patens
Pp3s32_280 10.0kb upstream 10.0kb upstream 10000 false scaffold_32: 88264-98263 Physcomitrium patens
Pp3s32_280 10.0kb downstream 10.0kb downstream 17483 true scaffold_32: 98264-115746 Physcomitrium patens
Pp3s32_280 10.0kb downstream 10.0kb downstream 10000 false scaffold_32: 105747-115746 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121331382 5274 Embryophyte Singleton cluster - no MSA
123368319 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain