Gene : Pp3s32_600 P. patens v3.3
Defline:  (1 of 2) PF00196 - Bacterial regulatory proteins, luxR family (GerE) Genomic Order:  62
Name:  ? Pp3s32_600 Secondary Identifier:  ? PAC:32948377
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3s32_600 0.5kb upstream 0.5kb upstream 1190 true scaffold_32: 235623-236812 Physcomitrium patens
Pp3s32_600 0.5kb upstream 0.5kb upstream 500 false scaffold_32: 235623-236122 Physcomitrium patens
Pp3s32_600 0.5kb downstream 0.5kb downstream 1190 true scaffold_32: 236123-237312 Physcomitrium patens
Pp3s32_600 0.5kb downstream 0.5kb downstream 500 false scaffold_32: 236813-237312 Physcomitrium patens
Pp3s32_600 1.0kb upstream 1.0kb upstream 1690 true scaffold_32: 235123-236812 Physcomitrium patens
Pp3s32_600 1.0kb upstream 1.0kb upstream 1000 false scaffold_32: 235123-236122 Physcomitrium patens
Pp3s32_600 1.0kb downstream 1.0kb downstream 1690 true scaffold_32: 236123-237812 Physcomitrium patens
Pp3s32_600 1.0kb downstream 1.0kb downstream 1000 false scaffold_32: 236813-237812 Physcomitrium patens
Pp3s32_600 2.0kb upstream 2.0kb upstream 2690 true scaffold_32: 234123-236812 Physcomitrium patens
Pp3s32_600 2.0kb upstream 2.0kb upstream 2000 false scaffold_32: 234123-236122 Physcomitrium patens
Pp3s32_600 2.0kb downstream 2.0kb downstream 2690 true scaffold_32: 236123-238812 Physcomitrium patens
Pp3s32_600 2.0kb downstream 2.0kb downstream 2000 false scaffold_32: 236813-238812 Physcomitrium patens
Pp3s32_600 5.0kb upstream 5.0kb upstream 5690 true scaffold_32: 231123-236812 Physcomitrium patens
Pp3s32_600 5.0kb upstream 5.0kb upstream 5000 false scaffold_32: 231123-236122 Physcomitrium patens
Pp3s32_600 5.0kb downstream 5.0kb downstream 5690 true scaffold_32: 236123-241812 Physcomitrium patens
Pp3s32_600 5.0kb downstream 5.0kb downstream 5000 false scaffold_32: 236813-241812 Physcomitrium patens
Pp3s32_600 10.0kb upstream 10.0kb upstream 10690 true scaffold_32: 226123-236812 Physcomitrium patens
Pp3s32_600 10.0kb upstream 10.0kb upstream 10000 false scaffold_32: 226123-236122 Physcomitrium patens
Pp3s32_600 10.0kb downstream 10.0kb downstream 10690 true scaffold_32: 236123-246812 Physcomitrium patens
Pp3s32_600 10.0kb downstream 10.0kb downstream 10000 false scaffold_32: 236813-246812 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121331367 5274 Embryophyte Singleton cluster - no MSA
123368304 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain