Gene : Pp3s30_620 P. patens v3.3
Defline:  (1 of 3) PTHR22550 - SPORE GERMINATION PROTEIN Genomic Order:  65
Name:  ? Pp3s30_620 Secondary Identifier:  ? PAC:32948539
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3s30_620 0.5kb upstream 0.5kb upstream 1985 true scaffold_30: 157349-159333 Physcomitrium patens
Pp3s30_620 0.5kb upstream 0.5kb upstream 500 false scaffold_30: 158834-159333 Physcomitrium patens
Pp3s30_620 0.5kb downstream 0.5kb downstream 1985 true scaffold_30: 156849-158833 Physcomitrium patens
Pp3s30_620 0.5kb downstream 0.5kb downstream 500 false scaffold_30: 156849-157348 Physcomitrium patens
Pp3s30_620 1.0kb upstream 1.0kb upstream 2485 true scaffold_30: 157349-159833 Physcomitrium patens
Pp3s30_620 1.0kb upstream 1.0kb upstream 1000 false scaffold_30: 158834-159833 Physcomitrium patens
Pp3s30_620 1.0kb downstream 1.0kb downstream 2485 true scaffold_30: 156349-158833 Physcomitrium patens
Pp3s30_620 1.0kb downstream 1.0kb downstream 1000 false scaffold_30: 156349-157348 Physcomitrium patens
Pp3s30_620 2.0kb upstream 2.0kb upstream 3485 true scaffold_30: 157349-160833 Physcomitrium patens
Pp3s30_620 2.0kb upstream 2.0kb upstream 2000 false scaffold_30: 158834-160833 Physcomitrium patens
Pp3s30_620 2.0kb downstream 2.0kb downstream 3485 true scaffold_30: 155349-158833 Physcomitrium patens
Pp3s30_620 2.0kb downstream 2.0kb downstream 2000 false scaffold_30: 155349-157348 Physcomitrium patens
Pp3s30_620 5.0kb upstream 5.0kb upstream 6485 true scaffold_30: 157349-163833 Physcomitrium patens
Pp3s30_620 5.0kb upstream 5.0kb upstream 5000 false scaffold_30: 158834-163833 Physcomitrium patens
Pp3s30_620 5.0kb downstream 5.0kb downstream 6485 true scaffold_30: 152349-158833 Physcomitrium patens
Pp3s30_620 5.0kb downstream 5.0kb downstream 5000 false scaffold_30: 152349-157348 Physcomitrium patens
Pp3s30_620 10.0kb upstream 10.0kb upstream 11485 true scaffold_30: 157349-168833 Physcomitrium patens
Pp3s30_620 10.0kb upstream 10.0kb upstream 10000 false scaffold_30: 158834-168833 Physcomitrium patens
Pp3s30_620 10.0kb downstream 10.0kb downstream 11485 true scaffold_30: 147349-158833 Physcomitrium patens
Pp3s30_620 10.0kb downstream 10.0kb downstream 10000 false scaffold_30: 147349-157348 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121331484 5274 Embryophyte Singleton cluster - no MSA
123368413 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain