Gene : Pp3s30_940 P. patens v3.3
Defline:  (1 of 2) 4.4.1.1 - Cystathionine gamma-lyase / Homoserine dehydratase Genomic Order:  97
Name:  ? Pp3s30_940 Secondary Identifier:  ? PAC:32948540
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens HOMOCYSDEGR-PWY Physcomitrium patens pathologic  
Ppatens LCYSDEG-PWY Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3s30_940 0.5kb upstream 0.5kb upstream 9590 true scaffold_30: 224707-234296 Physcomitrium patens
Pp3s30_940 0.5kb upstream 0.5kb upstream 500 false scaffold_30: 233797-234296 Physcomitrium patens
Pp3s30_940 0.5kb downstream 0.5kb downstream 9590 true scaffold_30: 224207-233796 Physcomitrium patens
Pp3s30_940 0.5kb downstream 0.5kb downstream 500 false scaffold_30: 224207-224706 Physcomitrium patens
Pp3s30_940 1.0kb upstream 1.0kb upstream 10090 true scaffold_30: 224707-234796 Physcomitrium patens
Pp3s30_940 1.0kb upstream 1.0kb upstream 1000 false scaffold_30: 233797-234796 Physcomitrium patens
Pp3s30_940 1.0kb downstream 1.0kb downstream 10090 true scaffold_30: 223707-233796 Physcomitrium patens
Pp3s30_940 1.0kb downstream 1.0kb downstream 1000 false scaffold_30: 223707-224706 Physcomitrium patens
Pp3s30_940 2.0kb upstream 2.0kb upstream 11090 true scaffold_30: 224707-235796 Physcomitrium patens
Pp3s30_940 2.0kb upstream 2.0kb upstream 2000 false scaffold_30: 233797-235796 Physcomitrium patens
Pp3s30_940 2.0kb downstream 2.0kb downstream 11090 true scaffold_30: 222707-233796 Physcomitrium patens
Pp3s30_940 2.0kb downstream 2.0kb downstream 2000 false scaffold_30: 222707-224706 Physcomitrium patens
Pp3s30_940 5.0kb upstream 5.0kb upstream 14090 true scaffold_30: 224707-238796 Physcomitrium patens
Pp3s30_940 5.0kb upstream 5.0kb upstream 5000 false scaffold_30: 233797-238796 Physcomitrium patens
Pp3s30_940 5.0kb downstream 5.0kb downstream 14090 true scaffold_30: 219707-233796 Physcomitrium patens
Pp3s30_940 5.0kb downstream 5.0kb downstream 5000 false scaffold_30: 219707-224706 Physcomitrium patens
Pp3s30_940 10.0kb upstream 10.0kb upstream 19090 true scaffold_30: 224707-243796 Physcomitrium patens
Pp3s30_940 10.0kb upstream 10.0kb upstream 10000 false scaffold_30: 233797-243796 Physcomitrium patens
Pp3s30_940 10.0kb downstream 10.0kb downstream 19090 true scaffold_30: 214707-233796 Physcomitrium patens
Pp3s30_940 10.0kb downstream 10.0kb downstream 10000 false scaffold_30: 214707-224706 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121331485 5274 Embryophyte Singleton cluster - no MSA
123368414 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain