Gene : Pp3s42_40 P. patens v3.3
Defline:  (1 of 1) PF07729 - FCD domain (FCD) Genomic Order:  4
Name:  ? Pp3s42_40 Secondary Identifier:  ? PAC:32945173
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-5692 Physcomitrium patens pathologic  
Ppatens PWY-5698 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3s42_40 0.5kb upstream 0.5kb upstream 13774 true scaffold_42: 6185-19958 Physcomitrium patens
Pp3s42_40 0.5kb upstream 0.5kb upstream 500 false scaffold_42: 19459-19958 Physcomitrium patens
Pp3s42_40 0.5kb downstream 0.5kb downstream 13774 true scaffold_42: 5685-19458 Physcomitrium patens
Pp3s42_40 0.5kb downstream 0.5kb downstream 500 false scaffold_42: 5685-6184 Physcomitrium patens
Pp3s42_40 1.0kb upstream 1.0kb upstream 14274 true scaffold_42: 6185-20458 Physcomitrium patens
Pp3s42_40 1.0kb upstream 1.0kb upstream 1000 false scaffold_42: 19459-20458 Physcomitrium patens
Pp3s42_40 1.0kb downstream 1.0kb downstream 14274 true scaffold_42: 5185-19458 Physcomitrium patens
Pp3s42_40 1.0kb downstream 1.0kb downstream 1000 false scaffold_42: 5185-6184 Physcomitrium patens
Pp3s42_40 2.0kb upstream 2.0kb upstream 15274 true scaffold_42: 6185-21458 Physcomitrium patens
Pp3s42_40 2.0kb upstream 2.0kb upstream 2000 false scaffold_42: 19459-21458 Physcomitrium patens
Pp3s42_40 2.0kb downstream 2.0kb downstream 15274 true scaffold_42: 4185-19458 Physcomitrium patens
Pp3s42_40 2.0kb downstream 2.0kb downstream 2000 false scaffold_42: 4185-6184 Physcomitrium patens
Pp3s42_40 5.0kb upstream 5.0kb upstream 18274 true scaffold_42: 6185-24458 Physcomitrium patens
Pp3s42_40 5.0kb upstream 5.0kb upstream 5000 false scaffold_42: 19459-24458 Physcomitrium patens
Pp3s42_40 5.0kb downstream 5.0kb downstream 18274 true scaffold_42: 1185-19458 Physcomitrium patens
Pp3s42_40 5.0kb downstream 5.0kb downstream 5000 false scaffold_42: 1185-6184 Physcomitrium patens
Pp3s42_40 10.0kb upstream 10.0kb upstream 23274 true scaffold_42: 6185-29458 Physcomitrium patens
Pp3s42_40 10.0kb upstream 10.0kb upstream 10000 false scaffold_42: 19459-29458 Physcomitrium patens
Pp3s42_40 10.0kb downstream 10.0kb downstream 19458 true scaffold_42: 1-19458 Physcomitrium patens
Pp3s42_40 10.0kb downstream 10.0kb downstream 6184 false scaffold_42: 1-6184 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121330852 5274 Embryophyte Singleton cluster - no MSA
123367808 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain