Gene : Pp3s34_430 P. patens v3.3
Defline:  (1 of 1) PF00989//PF02954//PF14532 - PAS fold (PAS) // Bacterial regulatory protein, Fis family (HTH_8) // Sigma-54 interaction domain (Sigma54_activ_2) Genomic Order:  45
Name:  ? Pp3s34_430 Secondary Identifier:  ? PAC:32948293
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3s34_430 0.5kb upstream 0.5kb upstream 2210 true scaffold_34: 132089-134298 Physcomitrium patens
Pp3s34_430 0.5kb upstream 0.5kb upstream 500 false scaffold_34: 132089-132588 Physcomitrium patens
Pp3s34_430 0.5kb downstream 0.5kb downstream 2210 true scaffold_34: 132589-134798 Physcomitrium patens
Pp3s34_430 0.5kb downstream 0.5kb downstream 500 false scaffold_34: 134299-134798 Physcomitrium patens
Pp3s34_430 1.0kb upstream 1.0kb upstream 2710 true scaffold_34: 131589-134298 Physcomitrium patens
Pp3s34_430 1.0kb upstream 1.0kb upstream 1000 false scaffold_34: 131589-132588 Physcomitrium patens
Pp3s34_430 1.0kb downstream 1.0kb downstream 2710 true scaffold_34: 132589-135298 Physcomitrium patens
Pp3s34_430 1.0kb downstream 1.0kb downstream 1000 false scaffold_34: 134299-135298 Physcomitrium patens
Pp3s34_430 2.0kb upstream 2.0kb upstream 3710 true scaffold_34: 130589-134298 Physcomitrium patens
Pp3s34_430 2.0kb upstream 2.0kb upstream 2000 false scaffold_34: 130589-132588 Physcomitrium patens
Pp3s34_430 2.0kb downstream 2.0kb downstream 3710 true scaffold_34: 132589-136298 Physcomitrium patens
Pp3s34_430 2.0kb downstream 2.0kb downstream 2000 false scaffold_34: 134299-136298 Physcomitrium patens
Pp3s34_430 5.0kb upstream 5.0kb upstream 6710 true scaffold_34: 127589-134298 Physcomitrium patens
Pp3s34_430 5.0kb upstream 5.0kb upstream 5000 false scaffold_34: 127589-132588 Physcomitrium patens
Pp3s34_430 5.0kb downstream 5.0kb downstream 6710 true scaffold_34: 132589-139298 Physcomitrium patens
Pp3s34_430 5.0kb downstream 5.0kb downstream 5000 false scaffold_34: 134299-139298 Physcomitrium patens
Pp3s34_430 10.0kb upstream 10.0kb upstream 11710 true scaffold_34: 122589-134298 Physcomitrium patens
Pp3s34_430 10.0kb upstream 10.0kb upstream 10000 false scaffold_34: 122589-132588 Physcomitrium patens
Pp3s34_430 10.0kb downstream 10.0kb downstream 11710 true scaffold_34: 132589-144298 Physcomitrium patens
Pp3s34_430 10.0kb downstream 10.0kb downstream 10000 false scaffold_34: 134299-144298 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121331318 5274 Embryophyte Singleton cluster - no MSA
123368258 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain