Gene : Pp3s58_100 P. patens v3.3
Defline:  (1 of 1) PF02311//PF12833 - AraC-like ligand binding domain (AraC_binding) // Helix-turn-helix domain (HTH_18) Genomic Order:  9
Name:  ? Pp3s58_100 Secondary Identifier:  ? PAC:32929817
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3s58_100 0.5kb upstream 0.5kb upstream 1487 true scaffold_58: 14966-16452 Physcomitrium patens
Pp3s58_100 0.5kb upstream 0.5kb upstream 500 false scaffold_58: 14966-15465 Physcomitrium patens
Pp3s58_100 0.5kb downstream 0.5kb downstream 1487 true scaffold_58: 15466-16952 Physcomitrium patens
Pp3s58_100 0.5kb downstream 0.5kb downstream 500 false scaffold_58: 16453-16952 Physcomitrium patens
Pp3s58_100 1.0kb upstream 1.0kb upstream 1987 true scaffold_58: 14466-16452 Physcomitrium patens
Pp3s58_100 1.0kb upstream 1.0kb upstream 1000 false scaffold_58: 14466-15465 Physcomitrium patens
Pp3s58_100 1.0kb downstream 1.0kb downstream 1987 true scaffold_58: 15466-17452 Physcomitrium patens
Pp3s58_100 1.0kb downstream 1.0kb downstream 1000 false scaffold_58: 16453-17452 Physcomitrium patens
Pp3s58_100 2.0kb upstream 2.0kb upstream 2987 true scaffold_58: 13466-16452 Physcomitrium patens
Pp3s58_100 2.0kb upstream 2.0kb upstream 2000 false scaffold_58: 13466-15465 Physcomitrium patens
Pp3s58_100 2.0kb downstream 2.0kb downstream 2987 true scaffold_58: 15466-18452 Physcomitrium patens
Pp3s58_100 2.0kb downstream 2.0kb downstream 2000 false scaffold_58: 16453-18452 Physcomitrium patens
Pp3s58_100 5.0kb upstream 5.0kb upstream 5987 true scaffold_58: 10466-16452 Physcomitrium patens
Pp3s58_100 5.0kb upstream 5.0kb upstream 5000 false scaffold_58: 10466-15465 Physcomitrium patens
Pp3s58_100 5.0kb downstream 5.0kb downstream 5987 true scaffold_58: 15466-21452 Physcomitrium patens
Pp3s58_100 5.0kb downstream 5.0kb downstream 5000 false scaffold_58: 16453-21452 Physcomitrium patens
Pp3s58_100 10.0kb upstream 10.0kb upstream 10987 true scaffold_58: 5466-16452 Physcomitrium patens
Pp3s58_100 10.0kb upstream 10.0kb upstream 10000 false scaffold_58: 5466-15465 Physcomitrium patens
Pp3s58_100 10.0kb downstream 10.0kb downstream 10987 true scaffold_58: 15466-26452 Physcomitrium patens
Pp3s58_100 10.0kb downstream 10.0kb downstream 10000 false scaffold_58: 16453-26452 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121328854 5274 Embryophyte Singleton cluster - no MSA
123365851 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain