Gene : Pp3s58_340 P. patens v3.3
Defline:  (1 of 1) PF03972 - MmgE/PrpD family (MmgE_PrpD) Genomic Order:  35
Name:  ? Pp3s58_340 Secondary Identifier:  ? PAC:32929839
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens PWY-2724 Physcomitrium patens pathologic  
Ppatens PWY66-21 Physcomitrium patens pathologic  
Ppatens PWY66-389 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3s58_340 0.5kb upstream 0.5kb upstream 7448 true scaffold_58: 62219-69666 Physcomitrium patens
Pp3s58_340 0.5kb upstream 0.5kb upstream 500 false scaffold_58: 62219-62718 Physcomitrium patens
Pp3s58_340 0.5kb downstream 0.5kb downstream 7448 true scaffold_58: 62719-70166 Physcomitrium patens
Pp3s58_340 0.5kb downstream 0.5kb downstream 500 false scaffold_58: 69667-70166 Physcomitrium patens
Pp3s58_340 1.0kb upstream 1.0kb upstream 7948 true scaffold_58: 61719-69666 Physcomitrium patens
Pp3s58_340 1.0kb upstream 1.0kb upstream 1000 false scaffold_58: 61719-62718 Physcomitrium patens
Pp3s58_340 1.0kb downstream 1.0kb downstream 7948 true scaffold_58: 62719-70666 Physcomitrium patens
Pp3s58_340 1.0kb downstream 1.0kb downstream 1000 false scaffold_58: 69667-70666 Physcomitrium patens
Pp3s58_340 2.0kb upstream 2.0kb upstream 8948 true scaffold_58: 60719-69666 Physcomitrium patens
Pp3s58_340 2.0kb upstream 2.0kb upstream 2000 false scaffold_58: 60719-62718 Physcomitrium patens
Pp3s58_340 2.0kb downstream 2.0kb downstream 8948 true scaffold_58: 62719-71666 Physcomitrium patens
Pp3s58_340 2.0kb downstream 2.0kb downstream 2000 false scaffold_58: 69667-71666 Physcomitrium patens
Pp3s58_340 5.0kb upstream 5.0kb upstream 11948 true scaffold_58: 57719-69666 Physcomitrium patens
Pp3s58_340 5.0kb upstream 5.0kb upstream 5000 false scaffold_58: 57719-62718 Physcomitrium patens
Pp3s58_340 5.0kb downstream 5.0kb downstream 11909 true scaffold_58: 62719-74627 Physcomitrium patens
Pp3s58_340 5.0kb downstream 5.0kb downstream 4961 false scaffold_58: 69667-74627 Physcomitrium patens
Pp3s58_340 10.0kb upstream 10.0kb upstream 16948 true scaffold_58: 52719-69666 Physcomitrium patens
Pp3s58_340 10.0kb upstream 10.0kb upstream 10000 false scaffold_58: 52719-62718 Physcomitrium patens
Pp3s58_340 10.0kb downstream 10.0kb downstream 11909 true scaffold_58: 62719-74627 Physcomitrium patens
Pp3s58_340 10.0kb downstream 10.0kb downstream 4961 false scaffold_58: 69667-74627 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121328869 5274 Embryophyte Singleton cluster - no MSA
123365866 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain