Gene : Pp3s405_30 P. patens v3.3
Defline:  (1 of 1) PF13518 - Helix-turn-helix domain (HTH_28) Genomic Order:  3
Name:  ? Pp3s405_30 Secondary Identifier:  ? PAC:32983517
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3s405_30 0.5kb upstream 0.5kb upstream 1178 true scaffold_405: 4776-5953 Physcomitrium patens
Pp3s405_30 0.5kb upstream 0.5kb upstream 500 false scaffold_405: 4776-5275 Physcomitrium patens
Pp3s405_30 0.5kb downstream 0.5kb downstream 1178 true scaffold_405: 5276-6453 Physcomitrium patens
Pp3s405_30 0.5kb downstream 0.5kb downstream 500 false scaffold_405: 5954-6453 Physcomitrium patens
Pp3s405_30 1.0kb upstream 1.0kb upstream 1678 true scaffold_405: 4276-5953 Physcomitrium patens
Pp3s405_30 1.0kb upstream 1.0kb upstream 1000 false scaffold_405: 4276-5275 Physcomitrium patens
Pp3s405_30 1.0kb downstream 1.0kb downstream 1678 true scaffold_405: 5276-6953 Physcomitrium patens
Pp3s405_30 1.0kb downstream 1.0kb downstream 1000 false scaffold_405: 5954-6953 Physcomitrium patens
Pp3s405_30 2.0kb upstream 2.0kb upstream 2678 true scaffold_405: 3276-5953 Physcomitrium patens
Pp3s405_30 2.0kb upstream 2.0kb upstream 2000 false scaffold_405: 3276-5275 Physcomitrium patens
Pp3s405_30 2.0kb downstream 2.0kb downstream 1736 true scaffold_405: 5276-7011 Physcomitrium patens
Pp3s405_30 2.0kb downstream 2.0kb downstream 1058 false scaffold_405: 5954-7011 Physcomitrium patens
Pp3s405_30 5.0kb upstream 5.0kb upstream 5678 true scaffold_405: 276-5953 Physcomitrium patens
Pp3s405_30 5.0kb upstream 5.0kb upstream 5000 false scaffold_405: 276-5275 Physcomitrium patens
Pp3s405_30 5.0kb downstream 5.0kb downstream 1736 true scaffold_405: 5276-7011 Physcomitrium patens
Pp3s405_30 5.0kb downstream 5.0kb downstream 1058 false scaffold_405: 5954-7011 Physcomitrium patens
Pp3s405_30 10.0kb upstream 10.0kb upstream 5953 true scaffold_405: 1-5953 Physcomitrium patens
Pp3s405_30 10.0kb upstream 10.0kb upstream 5275 false scaffold_405: 1-5275 Physcomitrium patens
Pp3s405_30 10.0kb downstream 10.0kb downstream 1736 true scaffold_405: 5276-7011 Physcomitrium patens
Pp3s405_30 10.0kb downstream 10.0kb downstream 1058 false scaffold_405: 5954-7011 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121335842 5274 Embryophyte Singleton cluster - no MSA
123372689 5275 Viridiplantae Singleton cluster - no MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain