Gene : Pp3c1_12370 P. patens v3.3
Defline:  (1 of 4) PTHR24031:SF306 - DEAD-BOX ATP-DEPENDENT RNA HELICASE 11 Genomic Order:  585
Name:  ? Pp3c1_12370 Secondary Identifier:  ? PAC:32970613
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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10 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_12370 0.5kb upstream 0.5kb upstream 4852 true Chr01: 9003042-9007893 Physcomitrium patens
Pp3c1_12370 0.5kb upstream 0.5kb upstream 500 false Chr01: 9007394-9007893 Physcomitrium patens
Pp3c1_12370 0.5kb downstream 0.5kb downstream 4852 true Chr01: 9002542-9007393 Physcomitrium patens
Pp3c1_12370 0.5kb downstream 0.5kb downstream 500 false Chr01: 9002542-9003041 Physcomitrium patens
Pp3c1_12370 1.0kb upstream 1.0kb upstream 5352 true Chr01: 9003042-9008393 Physcomitrium patens
Pp3c1_12370 1.0kb upstream 1.0kb upstream 1000 false Chr01: 9007394-9008393 Physcomitrium patens
Pp3c1_12370 1.0kb downstream 1.0kb downstream 5352 true Chr01: 9002042-9007393 Physcomitrium patens
Pp3c1_12370 1.0kb downstream 1.0kb downstream 1000 false Chr01: 9002042-9003041 Physcomitrium patens
Pp3c1_12370 2.0kb upstream 2.0kb upstream 6352 true Chr01: 9003042-9009393 Physcomitrium patens
Pp3c1_12370 2.0kb upstream 2.0kb upstream 2000 false Chr01: 9007394-9009393 Physcomitrium patens
Pp3c1_12370 2.0kb downstream 2.0kb downstream 6352 true Chr01: 9001042-9007393 Physcomitrium patens
Pp3c1_12370 2.0kb downstream 2.0kb downstream 2000 false Chr01: 9001042-9003041 Physcomitrium patens
Pp3c1_12370 5.0kb upstream 5.0kb upstream 9352 true Chr01: 9003042-9012393 Physcomitrium patens
Pp3c1_12370 5.0kb upstream 5.0kb upstream 5000 false Chr01: 9007394-9012393 Physcomitrium patens
Pp3c1_12370 5.0kb downstream 5.0kb downstream 9352 true Chr01: 8998042-9007393 Physcomitrium patens
Pp3c1_12370 5.0kb downstream 5.0kb downstream 5000 false Chr01: 8998042-9003041 Physcomitrium patens
Pp3c1_12370 10.0kb upstream 10.0kb upstream 14352 true Chr01: 9003042-9017393 Physcomitrium patens
Pp3c1_12370 10.0kb upstream 10.0kb upstream 10000 false Chr01: 9007394-9017393 Physcomitrium patens
Pp3c1_12370 10.0kb downstream 10.0kb downstream 14352 true Chr01: 8993042-9007393 Physcomitrium patens
Pp3c1_12370 10.0kb downstream 10.0kb downstream 10000 false Chr01: 8993042-9003041 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121348302 5274 Embryophyte View MSA
123425824 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.626        
cufflinks 1.681        
cufflinks 3.41       High
cufflinks 1.329       Low
cufflinks 1.451        
cufflinks 2.692        
cufflinks 1.66        
cufflinks 2.972        
cufflinks 2.339        
cufflinks 2.166        
cufflinks 1.389       Low
cufflinks 0.893       Low
cufflinks 3.222       High
cufflinks 2.191        
cufflinks 2.029        
cufflinks 3.718       High
cufflinks 3.089       High
cufflinks 2.182        
cufflinks 1.83        
cufflinks 0.849       Low
cufflinks 2.124        
cufflinks 2.125        
cufflinks 1.491        
cufflinks 1.724        
cufflinks 3.634       High
cufflinks 1.941        
cufflinks 1.551        
cufflinks 3.074       High
cufflinks 2.679        
cufflinks 1.496        

0 Strain