Gene : Pp3c1_20930 P. patens v3.3
Defline:  (1 of 2) PTHR11817:SF28 - PLASTIDIAL PYRUVATE KINASE 4, CHLOROPLASTIC Genomic Order:  953
Name:  ? Pp3c1_20930 Secondary Identifier:  ? PAC:32970860
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Ppatens ANAEROFRUCAT-PWY Physcomitrium patens pathologic  
Ppatens ANAGLYCOLYSIS-PWY Physcomitrium patens pathologic  
Ppatens GLYCOLYSIS Physcomitrium patens pathologic  
Ppatens PWY-1042 Physcomitrium patens pathologic  
Ppatens PWY-5464 Physcomitrium patens pathologic  
Ppatens PWY-5723 Physcomitrium patens pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_20930 0.5kb upstream 0.5kb upstream 5230 true Chr01: 15838021-15843250 Physcomitrium patens
Pp3c1_20930 0.5kb upstream 0.5kb upstream 500 false Chr01: 15838021-15838520 Physcomitrium patens
Pp3c1_20930 0.5kb downstream 0.5kb downstream 5230 true Chr01: 15838521-15843750 Physcomitrium patens
Pp3c1_20930 0.5kb downstream 0.5kb downstream 500 false Chr01: 15843251-15843750 Physcomitrium patens
Pp3c1_20930 1.0kb upstream 1.0kb upstream 5730 true Chr01: 15837521-15843250 Physcomitrium patens
Pp3c1_20930 1.0kb upstream 1.0kb upstream 1000 false Chr01: 15837521-15838520 Physcomitrium patens
Pp3c1_20930 1.0kb downstream 1.0kb downstream 5730 true Chr01: 15838521-15844250 Physcomitrium patens
Pp3c1_20930 1.0kb downstream 1.0kb downstream 1000 false Chr01: 15843251-15844250 Physcomitrium patens
Pp3c1_20930 2.0kb upstream 2.0kb upstream 6730 true Chr01: 15836521-15843250 Physcomitrium patens
Pp3c1_20930 2.0kb upstream 2.0kb upstream 2000 false Chr01: 15836521-15838520 Physcomitrium patens
Pp3c1_20930 2.0kb downstream 2.0kb downstream 6730 true Chr01: 15838521-15845250 Physcomitrium patens
Pp3c1_20930 2.0kb downstream 2.0kb downstream 2000 false Chr01: 15843251-15845250 Physcomitrium patens
Pp3c1_20930 5.0kb upstream 5.0kb upstream 9730 true Chr01: 15833521-15843250 Physcomitrium patens
Pp3c1_20930 5.0kb upstream 5.0kb upstream 5000 false Chr01: 15833521-15838520 Physcomitrium patens
Pp3c1_20930 5.0kb downstream 5.0kb downstream 9730 true Chr01: 15838521-15848250 Physcomitrium patens
Pp3c1_20930 5.0kb downstream 5.0kb downstream 5000 false Chr01: 15843251-15848250 Physcomitrium patens
Pp3c1_20930 10.0kb upstream 10.0kb upstream 14730 true Chr01: 15828521-15843250 Physcomitrium patens
Pp3c1_20930 10.0kb upstream 10.0kb upstream 10000 false Chr01: 15828521-15838520 Physcomitrium patens
Pp3c1_20930 10.0kb downstream 10.0kb downstream 14730 true Chr01: 15838521-15853250 Physcomitrium patens
Pp3c1_20930 10.0kb downstream 10.0kb downstream 10000 false Chr01: 15843251-15853250 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121346943 5274 Embryophyte View MSA
123380469 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 39.564     High  
cufflinks 3.5       Low
cufflinks 92.943     High High
cufflinks 35.823     High  
cufflinks 8.888        
cufflinks 5.183       Low
cufflinks 62.25     High  
cufflinks 16.459        
cufflinks 31.869     High  
cufflinks 32.414     High  
cufflinks 56.804     High  
cufflinks 144.409     High High
cufflinks 100.098     High High
cufflinks 52.253     High  
cufflinks 5.719       Low
cufflinks 23.591     High  
cufflinks 2.223       Low
cufflinks 11.821        
cufflinks 11.266        
cufflinks 17.909        
cufflinks 13.732        
cufflinks 50.794     High  
cufflinks 17.29        
cufflinks 66.628     High High
cufflinks 48.469     High  
cufflinks 48.941     High  
cufflinks 18.427        
cufflinks 5.279       Low
cufflinks 14.708        
cufflinks 4.014       Low

0 Strain