Gene : Pp3c1_21510 P. patens v3.3
Defline:  (1 of 2) PTHR12768 - BECLIN 1 Genomic Order:  983
Name:  ? Pp3c1_21510 Secondary Identifier:  ? PAC:32971808
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

8 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_21510 0.5kb upstream 0.5kb upstream 5850 true Chr01: 16184615-16190464 Physcomitrium patens
Pp3c1_21510 0.5kb upstream 0.5kb upstream 500 false Chr01: 16189965-16190464 Physcomitrium patens
Pp3c1_21510 0.5kb downstream 0.5kb downstream 5850 true Chr01: 16184115-16189964 Physcomitrium patens
Pp3c1_21510 0.5kb downstream 0.5kb downstream 500 false Chr01: 16184115-16184614 Physcomitrium patens
Pp3c1_21510 1.0kb upstream 1.0kb upstream 6350 true Chr01: 16184615-16190964 Physcomitrium patens
Pp3c1_21510 1.0kb upstream 1.0kb upstream 1000 false Chr01: 16189965-16190964 Physcomitrium patens
Pp3c1_21510 1.0kb downstream 1.0kb downstream 6350 true Chr01: 16183615-16189964 Physcomitrium patens
Pp3c1_21510 1.0kb downstream 1.0kb downstream 1000 false Chr01: 16183615-16184614 Physcomitrium patens
Pp3c1_21510 2.0kb upstream 2.0kb upstream 7350 true Chr01: 16184615-16191964 Physcomitrium patens
Pp3c1_21510 2.0kb upstream 2.0kb upstream 2000 false Chr01: 16189965-16191964 Physcomitrium patens
Pp3c1_21510 2.0kb downstream 2.0kb downstream 7350 true Chr01: 16182615-16189964 Physcomitrium patens
Pp3c1_21510 2.0kb downstream 2.0kb downstream 2000 false Chr01: 16182615-16184614 Physcomitrium patens
Pp3c1_21510 5.0kb upstream 5.0kb upstream 10350 true Chr01: 16184615-16194964 Physcomitrium patens
Pp3c1_21510 5.0kb upstream 5.0kb upstream 5000 false Chr01: 16189965-16194964 Physcomitrium patens
Pp3c1_21510 5.0kb downstream 5.0kb downstream 10350 true Chr01: 16179615-16189964 Physcomitrium patens
Pp3c1_21510 5.0kb downstream 5.0kb downstream 5000 false Chr01: 16179615-16184614 Physcomitrium patens
Pp3c1_21510 10.0kb upstream 10.0kb upstream 15350 true Chr01: 16184615-16199964 Physcomitrium patens
Pp3c1_21510 10.0kb upstream 10.0kb upstream 10000 false Chr01: 16189965-16199964 Physcomitrium patens
Pp3c1_21510 10.0kb downstream 10.0kb downstream 15350 true Chr01: 16174615-16189964 Physcomitrium patens
Pp3c1_21510 10.0kb downstream 10.0kb downstream 10000 false Chr01: 16174615-16184614 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121344553 5274 Embryophyte View MSA
123428819 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.925        
cufflinks 3.61       Low
cufflinks 6.608        
cufflinks 5.62        
cufflinks 7.594       High
cufflinks 4.998        
cufflinks 4.723        
cufflinks 6.527        
cufflinks 8.899       High
cufflinks 7.247       High
cufflinks 5.785        
cufflinks 4.801        
cufflinks 5.723        
cufflinks 6.492        
cufflinks 4.413       Low
cufflinks 5.444        
cufflinks 6.149        
cufflinks 4.765        
cufflinks 6.683        
cufflinks 4.027       Low
cufflinks 4.176       Low
cufflinks 5.783        
cufflinks 4.625        
cufflinks 7.678       High
cufflinks 5.684        
cufflinks 4.435       Low
cufflinks 7.089       High
cufflinks 4.755        
cufflinks 5.205        
cufflinks 3.932       Low

0 Strain