Gene : Pp3c1_21840 P. patens v3.3
Defline:  (1 of 8) PF13359 - DDE superfamily endonuclease (DDE_Tnp_4) Genomic Order:  1006
Name:  ? Pp3c1_21840 Secondary Identifier:  ? PAC:32967761
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

6 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_21840 0.5kb upstream 0.5kb upstream 2572 true Chr01: 16342703-16345274 Physcomitrium patens
Pp3c1_21840 0.5kb upstream 0.5kb upstream 500 false Chr01: 16342703-16343202 Physcomitrium patens
Pp3c1_21840 0.5kb downstream 0.5kb downstream 2572 true Chr01: 16343203-16345774 Physcomitrium patens
Pp3c1_21840 0.5kb downstream 0.5kb downstream 500 false Chr01: 16345275-16345774 Physcomitrium patens
Pp3c1_21840 1.0kb upstream 1.0kb upstream 3072 true Chr01: 16342203-16345274 Physcomitrium patens
Pp3c1_21840 1.0kb upstream 1.0kb upstream 1000 false Chr01: 16342203-16343202 Physcomitrium patens
Pp3c1_21840 1.0kb downstream 1.0kb downstream 3072 true Chr01: 16343203-16346274 Physcomitrium patens
Pp3c1_21840 1.0kb downstream 1.0kb downstream 1000 false Chr01: 16345275-16346274 Physcomitrium patens
Pp3c1_21840 2.0kb upstream 2.0kb upstream 4072 true Chr01: 16341203-16345274 Physcomitrium patens
Pp3c1_21840 2.0kb upstream 2.0kb upstream 2000 false Chr01: 16341203-16343202 Physcomitrium patens
Pp3c1_21840 2.0kb downstream 2.0kb downstream 4072 true Chr01: 16343203-16347274 Physcomitrium patens
Pp3c1_21840 2.0kb downstream 2.0kb downstream 2000 false Chr01: 16345275-16347274 Physcomitrium patens
Pp3c1_21840 5.0kb upstream 5.0kb upstream 7072 true Chr01: 16338203-16345274 Physcomitrium patens
Pp3c1_21840 5.0kb upstream 5.0kb upstream 5000 false Chr01: 16338203-16343202 Physcomitrium patens
Pp3c1_21840 5.0kb downstream 5.0kb downstream 7072 true Chr01: 16343203-16350274 Physcomitrium patens
Pp3c1_21840 5.0kb downstream 5.0kb downstream 5000 false Chr01: 16345275-16350274 Physcomitrium patens
Pp3c1_21840 10.0kb upstream 10.0kb upstream 12072 true Chr01: 16333203-16345274 Physcomitrium patens
Pp3c1_21840 10.0kb upstream 10.0kb upstream 10000 false Chr01: 16333203-16343202 Physcomitrium patens
Pp3c1_21840 10.0kb downstream 10.0kb downstream 12072 true Chr01: 16343203-16355274 Physcomitrium patens
Pp3c1_21840 10.0kb downstream 10.0kb downstream 10000 false Chr01: 16345275-16355274 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121351284 5274 Embryophyte View MSA
123382098 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.118       Low
cufflinks 7.98        
cufflinks 21.853       High
cufflinks 6.941        
cufflinks 7.978        
cufflinks 11.588        
cufflinks 10.857        
cufflinks 9.892        
cufflinks 8.675        
cufflinks 8.26        
cufflinks 9.751        
cufflinks 5.706        
cufflinks 10.079        
cufflinks 8.978        
cufflinks 10.612        
cufflinks 8.335        
cufflinks 9.003        
cufflinks 8.553        
cufflinks 12.81        
cufflinks 5.223       Low
cufflinks 2.874       Low
cufflinks 10.748        
cufflinks 8.861        
cufflinks 8.37        
cufflinks 3.167       Low
cufflinks 12.023        
cufflinks 5.708        
cufflinks 9.451        
cufflinks 13.003        
cufflinks 9.154        

0 Strain