Gene : Pp3c1_3090 P. patens v3.3
Genomic Order:  123 Name:  ? Pp3c1_3090
Secondary Identifier:  ? PAC:32968910
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

7 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Pp3c1_3090 0.5kb upstream 0.5kb upstream 2567 true Chr01: 2474591-2477157 Physcomitrium patens
Pp3c1_3090 0.5kb upstream 0.5kb upstream 500 false Chr01: 2476658-2477157 Physcomitrium patens
Pp3c1_3090 0.5kb downstream 0.5kb downstream 2567 true Chr01: 2474091-2476657 Physcomitrium patens
Pp3c1_3090 0.5kb downstream 0.5kb downstream 500 false Chr01: 2474091-2474590 Physcomitrium patens
Pp3c1_3090 1.0kb upstream 1.0kb upstream 3067 true Chr01: 2474591-2477657 Physcomitrium patens
Pp3c1_3090 1.0kb upstream 1.0kb upstream 1000 false Chr01: 2476658-2477657 Physcomitrium patens
Pp3c1_3090 1.0kb downstream 1.0kb downstream 3067 true Chr01: 2473591-2476657 Physcomitrium patens
Pp3c1_3090 1.0kb downstream 1.0kb downstream 1000 false Chr01: 2473591-2474590 Physcomitrium patens
Pp3c1_3090 2.0kb upstream 2.0kb upstream 4067 true Chr01: 2474591-2478657 Physcomitrium patens
Pp3c1_3090 2.0kb upstream 2.0kb upstream 2000 false Chr01: 2476658-2478657 Physcomitrium patens
Pp3c1_3090 2.0kb downstream 2.0kb downstream 4067 true Chr01: 2472591-2476657 Physcomitrium patens
Pp3c1_3090 2.0kb downstream 2.0kb downstream 2000 false Chr01: 2472591-2474590 Physcomitrium patens
Pp3c1_3090 5.0kb upstream 5.0kb upstream 7067 true Chr01: 2474591-2481657 Physcomitrium patens
Pp3c1_3090 5.0kb upstream 5.0kb upstream 5000 false Chr01: 2476658-2481657 Physcomitrium patens
Pp3c1_3090 5.0kb downstream 5.0kb downstream 7067 true Chr01: 2469591-2476657 Physcomitrium patens
Pp3c1_3090 5.0kb downstream 5.0kb downstream 5000 false Chr01: 2469591-2474590 Physcomitrium patens
Pp3c1_3090 10.0kb upstream 10.0kb upstream 12067 true Chr01: 2474591-2486657 Physcomitrium patens
Pp3c1_3090 10.0kb upstream 10.0kb upstream 10000 false Chr01: 2476658-2486657 Physcomitrium patens
Pp3c1_3090 10.0kb downstream 10.0kb downstream 12067 true Chr01: 2464591-2476657 Physcomitrium patens
Pp3c1_3090 10.0kb downstream 10.0kb downstream 10000 false Chr01: 2464591-2474590 Physcomitrium patens

2 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121343467 5274 Embryophyte View MSA
123379694 5275 Viridiplantae View MSA

32 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.421        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.131        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.107        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.137        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 2.896       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.075       Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.226        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.353        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.271        
cufflinks 0.122        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain